How to convert to GCT and CLS from imported GEO?

[angela cannata]

I am trying to convert GEO imported data that is in .txt format into .gct and cls files to run genepattern analyses but cannot seem to find the correct module that does this without an error. What steps did you take to this? I am looking to see where I am going wrong.

Please respond with the following information as applicable:
 A complete description of the problem (ie what you were trying to do and what went wrong):

Job ID if run on a publicly available server.

If not on Public Server, please share your input files, if possible. If you need to do so privately, let us know.
 
   What were your Parameter values?
   Server Platform (Mac/Linux)?

   Any errors or warnings you see in either stderr.txt, stdout.txt or popup dialogues:


Please note that many common errors can be resolved by searching this forum or taking a look at our documentation: 

* Module Documentation - available from the "documentation" link in the upper right-hand corner of the module input page or here: https://www.genepattern.org/modules
* GenePattern FAQ - https://www.genepattern.org/FAQ
* GenePattern  Videos - https://www.genepattern.org/video-tutorials
* GenePattern File Formats - https://www.genepattern.org/file-formats-guide#file-formats
* GenePattern User Guide - https://www.genepattern.org/user-guide#user-guide
* GenePattern Programmer's Guide - https://www.genepattern.org/programmers-guide
* GenePattern Release Notes - https://github.com/genepattern/genepattern-server/releases/latest

[Barbara Hill]

Hello, 

I am looking into this and will respond in this thread: https://groups.google.com/forum/?utm_medium=email&utm_source=footer#!msg/genepattern-help/fq2JVUVbKNU/Ny1pArOCAQAJ

Best

Barbara