Question on the CNV analysis of Affymetrix cytoscan HD

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Jibin Zhang

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Jul 31, 2020, 2:18:45 PM7/31/20
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Hello everyone:

Sorry to cluster your email. I am a new user of GenePattern. Does anyone know how to use it to analyze copy number variation with the Affymetrix Cytoscan HD CEL data? I am trying to use the Affymetrix SNP6 Copy Number Inference Pipeline, but I could not find the option for cytoscan data. I also did not find in the manual. I would appreciate if someone can give me a guidance. 

Jibin

Barbara Hill

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Jul 31, 2020, 5:41:47 PM7/31/20
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Hello Jibin, 


I'm sorry we couldn't be more helpful.

Please let us know if we can help with anything else.

All the best
-Barbara
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