Mutect2

[Imran Noorani]

Hi GP team,

I was wondering whether it would be possible to add a pipeline on GP for detecting mutations in cancer samples? For example, if you have downstream tools for looking at mutational significance but I can't see a method there for detecting the mutations. Mutect2 would be very useful. Please can you kindly let me know what you advise?

Many thanks,

Imran

[Michael Reich]

Hi Imran,

We're currently reviewing the available mutation detection tools, including Mutect2, for inclusion in GenePattern. For now, if you are interested in using Mutect2, it is available in Galaxy.

Best,
Michael

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Michael Reich
Assistant Director of Bioinformatics
University of California, San Diego
9500 Gilman Dr. #0765
La Jolla, CA 92093-0765

[Imran Noorani]

Hi Michael 

This is very helpful thank you

Best wishes

Imran 

Sent from my iPhone

On 22 Oct 2024, at 22:14, Michael Reich <mmr...@cloud.ucsd.edu> wrote:



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