GenePattern Help Forum
Hello,
I want to perform hierarchical clustering but i keep on getting errors.
What am I doing wrong in my file?
::::: 12:14:35.777800 37 ===> About to parse the inputs
Using:
gct_name = /opt/gpbeta/gp_home/users/<redacted username>/uploads/tmp/run4726136103131038224.tmp/input.filename/1/<redacted file name with spaces>.gct
col_distance_metric = pearson
output_distances = False
row_distance_metric = No_row_clustering
clustering_method = average
output_base_name = alle qPCR dCT A3 versie 2
row_normalization = True
col_normalization = True
row_centering = Mean
col_centering = Mean
['/opt/gpbeta/gp_home/taskLib/HierarchicalClustering.7.17.648/HierarchicalClustering.py', '/opt/gpbeta/gp_home/users/<redacted username>/uploads/tmp/run4726136103131038224.tmp/input.filename/1/<redacted filename with spaces>.gct', '2', 'False', '0', 'a', '<redacted file name>', 'True', 'True', 'Mean', 'Mean']
::::: 12:14:35.777868 45 ===> About to parse data
Kind regards,