Job ID 446023 and Job ID446027

[Shwetha Kumar]

Dear Sir/Madam,

I am using the maf files from CCLE data and the job for the whole data (Job 446023) works but for a specific lineage (Job ID 446027), it throws out an error saying not enough mutations to analyze.

Error using gp_MutSigCV>MutSig_runCV (line 850)
not enough mutations to analyze

Error in gp_MutSigCV (line 194)

Thank you.

Best,

Shwetha

[Ted Liefeld]

Hi,

The breast cancer only MAF file seems quite short (only 83 lines) so it might be that it does not have enough mutations to reach significance, but that is just a guess. We no longer have anyone on the genepattern team with MutSigCV experience.  I suggest you contact some of the other, MutSig specific, addresses in the MutSigCV documentation

http://www.broadinstitute.org/cancer/cga/mutsig

http://www.broadinstitute.org/cancer/cga/cga_forums

mutsi...@broadinstitute.org

hope this helps,

Ted

[Shwetha Kumar]

Thank you so much.

Shwetha

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