GISTIC2 with public server

[Shota Kato]

Hi, 

I performed GISTIC2 with the public server.

However, the amplification/deletion plots showed a narrow region of chromosome 8 (file attached).

I would like to know how I can solve this problem.

I used a segmentation file from WGS data and the provided hg38 ref file.

Thank you, 

Shota

[Andrew Cherniack]

Hi

We need to know more about how you ran GISTIC to answer your question.

Can you provide us with your input parameters and seg file?

Andy

[Shota Kato]

Hello Andy, 

I used the default parameters with the broad analysis option.

I attached the input seg file.

I appreciate your cooperation.

Best regards,

Shota

2025年1月29日水曜日 4:12:32 UTC+9 Andrew Cherniack: