how can I get these files about MutSigCV ? like chr_files_hg19.zip mutation_type_dictionary_file.txt exome_full192.coverage.txt.zip gene.covariates.

[ybx523...@gmail.com]

Please respond with the following information as applicable:
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Please note that many common errors can be resolved by searching this forum or taking a look at our documentation: 

* Module Documentation - available from the "documentation" link in the upper right hand corner of the module input page or here: http://software.broadinstitute.org/cancer/software/genepattern/modules
* GenePattern FAQ - http://software.broadinstitute.org/cancer/software/genepattern/FAQ
* GenePattern  Videos - http://software.broadinstitute.org/cancer/software/genepattern/video-tutorials
* GenePattern File Formats - http://software.broadinstitute.org/cancer/software/genepattern/file-formats-guide#file-formats
* GenePattern User Guide - http://software.broadinstitute.org/cancer/software/genepattern/user-guide#user-guide
* GenePattern Programmer's Guide - http://software.broadinstitute.org/cancer/software/genepattern/programmers-guide
* GenePattern Release Notes - http://software.broadinstitute.org/cancer/software/genepattern/doc/relnotes/current

these files  can't be downloaded  in CGA (https://software.broadinstitute.org/cancer/cga/mutsig_run)  .So how can I get those ? TX

[Barbara Hill]

Hello, 

It appears the MutSig authors and/or the IT department at the Broad have archived these files. I'm investigating whether they are still accessible.

Best

-Barbara

[Barbara Hill]

Hello, 

You should be able to access them by appending the file names to the end of this URL:

https://software.broadinstitute.org/cancer/cga/sites/default/files/data/tools/mutsig/reference_files/<filename.file>

For instance:

https://software.broadinstitute.org/cancer/cga/sites/default/files/data/tools/mutsig/reference_files/mutation_type_dictionary_file.txt

All the best

-Barbara