Query

[Tanay Ghosh]

Dear Genemania team,

I wonder if you have received my email (below) and got any time to read
that.

Thank you in advance and I am looking forward to learning from you.

Sincerely,

Tanay Ghosh

-------- Original Message --------
Subject: network output query
Date: 2018-10-06 23:10
From: Tanay Ghosh <tg...@cam.ac.uk>
To: genemani...@googlegroups.com

Dear Genemania team,

I was exploring Genemania using the list below as an input (and
selecting Mouse):
Cdh8
Cntnap2
Cntnap4
Negr1
Pard3
Pcdh19
Pcdh20
Wnt7b


In the output network, I am seeing other genes those are not in the
input (above) and I want to remove those and want to show a network
graph restricted to my input genes (above) only.

Is that possible? Furthermore how can I extract connection score (to
find highest connected gene) for the network graph?

Thank you very much in advance.

Sincerely,

Tanay Ghosh

--
Dr. Tanay Ghosh, PhD
Research Associate
Department of Clinical Neurosciences,
Wellcome Trust-Medical Research Council Cambridge Stem Cell Institute,
Clifford Allbutt Building,
Cambridge Biomedical Campus,
University of Cambridge,
Cambridge CB2 0AH

[Gary Bader]

Hi Tanay,
If you just want to see the connections between your query genes, you can set the number of returned genes to zero in the advanced options. There is no way to extract a connection score automatically. Each returned network is scored for relevance to your set of query genes.

Best,
Gary

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