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genemania-discuss
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Nicholas Price
,
Gary Bader
3
6/14/22
Observed percent co-expression sign. higher than random samples
Hi Gary, Yes, I will generate random samples. So I guess I will download the networks to examine the
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Observed percent co-expression sign. higher than random samples
Hi Gary, Yes, I will generate random samples. So I guess I will download the networks to examine the
6/14/22
晨韦
4/15/21
Some question about GeneMANIA’s results
Dear GeneMANIA team, I am a graduate student of China Medical University named Michael Townley.Now I
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Some question about GeneMANIA’s results
Dear GeneMANIA team, I am a graduate student of China Medical University named Michael Townley.Now I
4/15/21
Anthony Cros
,
Gary Bader
8
4/2/21
Processing Genemania data with Gallia
Thanks Anthony. Hopefully people see it in this email forum (or elsewhere) and find it valuable. Best
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Processing Genemania data with Gallia
Thanks Anthony. Hopefully people see it in this email forum (or elsewhere) and find it valuable. Best
4/2/21
Guillermo Gervasini
6/15/20
Interpreting weights
Hi Genemania team, I am using Genemania integrated in Cytoscape and I have been looking for
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Interpreting weights
Hi Genemania team, I am using Genemania integrated in Cytoscape and I have been looking for
6/15/20
Anton Kratz
, …
Christian Lopes
5
3/2/20
Genemania network support only without gene set expansion
Hi Anton, Could you please send me the session file (.cys) with the network you are trying to convert
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Genemania network support only without gene set expansion
Hi Anton, Could you please send me the session file (.cys) with the network you are trying to convert
3/2/20
Quaid Morris
12/16/19
Re: GeneMANIA on gene list of ~2000 genes
Hi Robert, Thanks for your email! We normally suggest that people use the Cytoscape app for larger
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Re: GeneMANIA on gene list of ~2000 genes
Hi Robert, Thanks for your email! We normally suggest that people use the Cytoscape app for larger
12/16/19
廖伟
2
6/9/19
The problems of using GeneMANIA database
Dear GeneMANIA team, I am a graduate student the Neuroscience Research Center in Chongqing Medical
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The problems of using GeneMANIA database
Dear GeneMANIA team, I am a graduate student the Neuroscience Research Center in Chongqing Medical
6/9/19
Susha Suresh
,
Christian Lopes
3
4/2/19
Gene mania data download issue
Hi, Susha -- The GeneMANIA data server is up and running again. Sorry for the inconvenience. Thanks,
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Gene mania data download issue
Hi, Susha -- The GeneMANIA data server is up and running again. Sorry for the inconvenience. Thanks,
4/2/19
ppal...@tezu.ernet.in
,
Christian Lopes
2
3/28/19
Unable to download H.sapiens dataset
Hi, It works for me, but I just noticed that the loading bar dialog seems to disappear but is
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Unable to download H.sapiens dataset
Hi, It works for me, but I just noticed that the loading bar dialog seems to disappear but is
3/28/19
Gambrell, Haley Jo
3/8/19
GeneMANIA feedback
To whom it may concern, I am a biochemistry student at the University of Tennessee and was recently
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GeneMANIA feedback
To whom it may concern, I am a biochemistry student at the University of Tennessee and was recently
3/8/19
Houda Benlhabib
,
Quaid Morris
2
2/21/19
Questions
Can you please give us some examples of genes in the list? Possibly you are using a strange naming
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Questions
Can you please give us some examples of genes in the list? Possibly you are using a strange naming
2/21/19
Matthew Youngman
,
Gary Bader
2
1/16/19
wormbase vs. genemania website
Hi Matt - did you look in the advanced options in the website to select all of the available networks
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wormbase vs. genemania website
Hi Matt - did you look in the advanced options in the website to select all of the available networks
1/16/19
Amanda L. Flores-Torres
,
Gary Bader
2
1/8/19
Access to GeneMANIA
Hi - sorry, the site is down and our sys admins are all on vacation. We will get the site back up as
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Access to GeneMANIA
Hi - sorry, the site is down and our sys admins are all on vacation. We will get the site back up as
1/8/19
Juarez, Fabiola
,
Gary Bader
2
12/29/18
Start of a database for protein purification
Hi Fabiola - could you provide some additional information about your proposed use? GeneMANIA can
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Start of a database for protein purification
Hi Fabiola - could you provide some additional information about your proposed use? GeneMANIA can
12/29/18
Sternberg, Paul W.
, …
Gary Bader
3
12/20/18
data sources for gene mania?
Hi Paul - we do list network data sources at http://pages.genemania.org/help/#network-data-sources
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data sources for gene mania?
Hi Paul - we do list network data sources at http://pages.genemania.org/help/#network-data-sources
12/20/18
Shreyoshi Borah
12/7/18
Query about the Genemania site
Hello, Is the Genemania site down? I am not able to access it since the last 12 hours. It was working
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Query about the Genemania site
Hello, Is the Genemania site down? I am not able to access it since the last 12 hours. It was working
12/7/18
Tan Tuan Zea
11/30/18
Drawing the network in circular plot
Dear Genemania team thank you for such a great tool! I wanted to plot the network in circular plot as
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Drawing the network in circular plot
Dear Genemania team thank you for such a great tool! I wanted to plot the network in circular plot as
11/30/18
farinaz ziaee
,
Gary Bader
2
11/21/18
Here you go. Thanks for using genemania! https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030815/ On Wed
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Here you go. Thanks for using genemania! https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030815/ On Wed
11/21/18
Reis, Surya A.,Ph.D.
,
Quaid Morris
2
11/13/18
dowloading network images
I'm not sure that we offer .svg downloads anymore. It looks like we can only give you jpg. Quaid
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dowloading network images
I'm not sure that we offer .svg downloads anymore. It looks like we can only give you jpg. Quaid
11/13/18
Sören Mucha
,
Gary Bader
2
11/12/18
question
Hi Sören - great. The node size is proportional to their similarity to the set of query nodes. Best,
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question
Hi Sören - great. The node size is proportional to their similarity to the set of query nodes. Best,
11/12/18
Neil, Keith
,
Gary Bader
2
11/5/18
question about identifying which pathway is shared between two genes
Hi Keith - GeneMANIA uses the SIF version of pathways from Pathway Commons (http://www.pathwaycommons
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question about identifying which pathway is shared between two genes
Hi Keith - GeneMANIA uses the SIF version of pathways from Pathway Commons (http://www.pathwaycommons
11/5/18
Tanay Ghosh
,
Gary Bader
2
10/9/18
Query
Hi Tanay, If you just want to see the connections between your query genes, you can set the number of
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Query
Hi Tanay, If you just want to see the connections between your query genes, you can set the number of
10/9/18
Tanay Ghosh
10/6/18
network output query
Dear Genemania team, I was exploring Genemania using the list below as an input (and selecting Mouse)
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network output query
Dear Genemania team, I was exploring Genemania using the list below as an input (and selecting Mouse)
10/6/18
Kellogg, Dean L
,
Gary Bader
2
10/2/18
Copyright permission
Hi Trey - no restrictions, go ahead. Best, Gary > On Oct 2, 2018, at 8:12 PM, Kellogg, Dean L <
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Copyright permission
Hi Trey - no restrictions, go ahead. Best, Gary > On Oct 2, 2018, at 8:12 PM, Kellogg, Dean L <
10/2/18
Juan Fernando Argüello
,
Gary Bader
3
9/12/18
GeneMANIA question of network visualization
Dear Gary, Thanks much for your response. I have a new software developer job related to research in
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GeneMANIA question of network visualization
Dear Gary, Thanks much for your response. I have a new software developer job related to research in
9/12/18
in...@mg.sslaid.com
8/15/18
[Warning] Your SSL certificate for genemania.org is expiring
SSLAID.COM SSL certificate for site genemania.org is expiring in 1 hours. After expiring https://
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[Warning] Your SSL certificate for genemania.org is expiring
SSLAID.COM SSL certificate for site genemania.org is expiring in 1 hours. After expiring https://
8/15/18
Vera Inacio
7/9/18
Doubts on GO Cellular Component based network
Dear Sirs, I am trying to predict the protein co-localization reflecting the predicted sub-cellular
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Doubts on GO Cellular Component based network
Dear Sirs, I am trying to predict the protein co-localization reflecting the predicted sub-cellular
7/9/18
Tang, Jing
, …
Christian Lopes
5
6/19/18
Interpretation of the gene scores in GeneMania
Hi Jing, I see... That panel is not created by GeneMANIA. It seems it's from the Gravity app (
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Interpretation of the gene scores in GeneMania
Hi Jing, I see... That panel is not created by GeneMANIA. It seems it's from the Gravity app (
6/19/18
Erfan Asgari
5/31/18
weight method application
Hi! I recently working on my protein data, retrieved by MASS, since the number of my protein data is
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weight method application
Hi! I recently working on my protein data, retrieved by MASS, since the number of my protein data is
5/31/18
MD. Hadiull ISLAM
5/19/18
Merging networks
Hello there. Wishing a little help related to your cytoscape plugin 'Genemania'. I have made
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Merging networks
Hello there. Wishing a little help related to your cytoscape plugin 'Genemania'. I have made
5/19/18