update annotations

[Andrea Spinelli]

Hi!
Awesome tool, thanks a lot.

I use Gemini to annotate variant, post VEP annotation. Today several annotation tracks and resources are old, for example, there is no GRCh38 resource.
How can I update the various resources?

Thanks for your answer.

Andrea

[Brent Pedersen]

hi,
the annotations that come with gemini are fixed to hg19. However, you
can use any
annotations (and genome build) you like if you use the new loader:
https://github.com/quinlan-lab/vcf2db/
we recommend to annotate your VCF with VEP and vcfanno and then use
vcf2db to load.
You can read more about this here:
http://quinlanlab.org/blog/2016/05/02/gemini-2-progress.html

-Brent

[Andrea Spinelli]

Thank you Brent!
I will follow yourindications.

Andrea