size limit of gemini db

25 views
Skip to first unread message

Aurel Beliard

unread,
Feb 1, 2018, 4:07:02 AM2/1/18
to gemini-variation
Hi,
 what would be the limit size of a  gemini db before the software becomes too slow?  I may have experiment with lots of variant and i'm wondering if gemini is adapted for what i want to do.

thanks in advance

Brent Pedersen

unread,
Feb 1, 2018, 9:27:39 AM2/1/18
to Aurel Beliard, gemini-variation
We have put 2076 whole genomes into gemini. It can be slow for some
queries, but it's workable.
There's no clear cutoff on size, but I'd say up to 500 whole genomes
will handle queries in a few
minutes at most and down to a few seconds at best.
-Brent
Reply all
Reply to author
Forward
0 new messages