aaf_exac_all annotation seems to be wrong

[Javier Simón-Sánchez]

Hello,

the allele frequency displayed in this annotation seems to be wrong. For many variants it reads -1 (not present in gnoAD database) but when you actually browse for this variant, it is identified and, in some cases, pretty common. 

See for example rs58941669

[Brent Pedersen]

Hi Javier, that variant appears in gnomad:
http://gnomad.broadinstitute.org/variant/1-3775226-G-A
but not in ExAC. Even the gnomad pages indicates it's not in the exome.

Hope that helps,
-B

[Javier Simón-Sánchez]

Yes, i know is not in the exome. the issue here is that gemini annotation says that is not present in gnomad (aaf=-1) while is not true

thanks

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Javier Simón Sánchez

[Javier Simón-Sánchez]

I see that only gnomad exomes are included in gemini database. Any plans to include the complete gnomad database?