here is the case of deepvariant

[hze...@gmail.com]

dear lifesciences team

deepvariant geneated files and report via ssh ubuntu vm instancs in gcp

how to download these files to gcp or in pc desktop

it is important to view and download files and reports and htm;l file in google chrome

  HG003.output.visual_report.html

and

HG003.output.g.vcf.gz  HG003.output.g.vcf.gz.tbi  HG003.output.vcf.gz  HG003.output.vcf.gz.tbi  HG003.output.visual_report.html  intermediate_results_dir

here are details

annular-net-280621-deepvariant-run:~/deepvariant-run/output$ ls

HG003.output.g.vcf.gz  HG003.output.g.vcf.gz.tbi  HG003.output.vcf.gz  HG003.output.vcf.gz.tbi  HG003.output.visual_report.html  intermediate_results_dir

annular-net-280621-deepvariant-run:~/deepvariant-run/output$ 

thanks in advance 

haroon zeb khan

[Paul Grosu]

Hi Haroon,

Remember my post from a month ago here regarding how to transfer files -- below is a link to that discussion:

https://groups.google.com/g/gcp-life-sciences-discuss/c/xyhV0H7zddw

Paul