Error while Garli 2.0 debian compilation

[arr...@poczta.fm]

Dear Garli Users,
i have problem concerning our favourite phylogenetic program compilation :)
I used instruction found on this page and and until i used make everything was ok.
Below is what i get:

root@debian:~/Garli/garli-2.01# make
make  all-recursive
make[1]: Entering directory `/root/Garli/garli-2.01'
Making all in src
make[2]: Entering directory `/root/Garli/garli-2.01/src'
mpic++  -DUNIX -DNCL_CONST_FUNCS -DNDEBUG -Wno-uninitialized -fsigned-char -DSUB
ROUTINE_GARLI -O3 -ffast-math -funroll-loops -fstrict-aliasing -L/usr/local/lib/
ncl -L/usr/local/lib/ncl -o Garli adaptation.o bipartition.o condlike.o configop
tions.o configreader.o datamatr.o funcs.o garlimain.o garlireader.o individual.o
 linalg.o model.o mpifuncs.o optimization.o population.o rng.o sequencedata.o se
t.o translatetable.o tree.o treenode.o mpitrick.o  -lncl -lncl
/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o: In function
`_start':
(.text+0x20): undefined reference to `main'
collect2: error: ld returned 1 exit status
make[2]: *** [Garli] Error 1
make[2]: Leaving directory `/root/Garli/garli-2.01/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/root/Garli/garli-2.01'
make: *** [all] Error 2

I will be very grateful for help.

Best regards,

Tomek

[eik...@googlemail.com]

Dear Garli Users,

I am getting the exact same error (only using gcc 4.6 instead of 4.7) on a Ubuntu 14.04 machine. Did anybody know about a workaround?

Thanks in advance

Eike

[eik...@googlemail.com]

Dear Tomek,

I had a similar problem on a 64 bit Ubuntu (14.04). I tried to compile a mpi version of GARLI 2.01 on a machine where I installed previously a normal version. So my impression was, that some of the previous config files made the problem. I removed the garli folder and re-extracted it. After that the installation worked fine.

I used the build_garli.sh script with the --enable-mpi option.

I hope this can help.

best regards

eike

Am Samstag, 24. Mai 2014 18:39:17 UTC+2 schrieb arr...@poczta.fm:

[arr...@poczta.fm]

Dear Eike,
thanks for Your reply.
It helped :)

Kind regards,

Tomek

[eik...@googlemail.com]

Good to hear.

Best

eike