problem calculating consensus tree in PAUP

[Cynthia Asorey]

Dear all,

I´m working with Garli and I have calculated the consensus tree in Paup as it´s suggest in Garli´s manual. But consensus tree topology is not agree with ML best tree in spite of the fact that one node has 90% of bootstrap. The way that I have calculated the consensus tree in Paup was the following:

get tree=name.boot.tree

bootstrap nrep=10000

then savetree file=nombre.tree from=1 to=1

Maybe, i´m wrong with Paup commands?

Thanks in advance

yours 

Cynthia