ppa and pip install failed: another (2) feedback from beta tester

Valéry Ozenne

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May 27, 2020, 5:34:29 AM5/27/20

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Hi

In this case , it is an installation on WSL using the PPA , the following command returns: gadgetron_ismrmrd_client -f testdata.h5

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Je viens de tester l'installation PPA sur WSL.

J'arrive à lancer le gadgetron, mais lorsque je tape gadgetron_ismrmrd_client -f testdata.h5, j'obtiens l'erreur suivante :

05-27 10:16:40.847 INFO [Server.cpp:42] Accepted connection from: ::ffff:127.0.0.1

05-27 10:16:40.847 INFO [ConfigConnection.cpp:113] Connection state: [CONFIG]

05-27 10:16:40.847 DEBUG [ConfigConnection.cpp:55] Reading config file: "/usr/share/gadgetron/config/default.xml"

05-27 10:16:40.848 INFO [HeaderConnection.cpp:82] Connection state: [HEADER]

05-27 10:16:40.849 INFO [StreamConnection.cpp:75] Connection state: [STREAM]

05-27 10:16:40.849 DEBUG [Stream.cpp:52] Loading Gadget RemoveROOversampling of class RemoveROOversamplingGadget from gadgetron_mricore

terminate called after throwing an instance of 'std::runtime_error'

what(): Unable to load ISMRMRD XML header

Aborted (core dumped)

Pierre Bour

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May 27, 2020, 6:28:36 AM5/27/20

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Hi everyone,

To follow the previous beug report, here is what I've got when trying to recon the shepp_logan dataset

gadgetron side:

pierreb@IHUSUX001:~$ gadgetron
05-27 12:24:13.933 INFO [main.cpp:50] Gadgetron 4.1.1 [NA]
05-27 12:24:13.933 INFO [main.cpp:51] Running on port 9002
05-27 12:24:13.933 INFO [Server.cpp:25] Gadgetron home directory: "/usr/local"
05-27 12:24:13.933 INFO [Server.cpp:26] Gadgetron working directory: "/tmp/gadgetron/"
05-27 12:24:16.337 INFO [Server.cpp:42] Accepted connection from: ::ffff:127.0.0.1
05-27 12:24:16.337 INFO [ConfigConnection.cpp:113] Connection state: [CONFIG]
05-27 12:24:16.338 DEBUG [ConfigConnection.cpp:55] Reading config file: "/usr/local/share/gadgetron/config/default.xml"
05-27 12:24:16.338 INFO [HeaderConnection.cpp:82] Connection state: [HEADER]
05-27 12:24:16.339 INFO [StreamConnection.cpp:75] Connection state: [STREAM]
05-27 12:24:16.339 DEBUG [Stream.cpp:52] Loading Gadget RemoveROOversampling of class RemoveROOversamplingGadget from gadgetron_mricoreterminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::system::system_error> >'
what(): boost::dll::shared_library::load() failed (dlerror system message: gadgetron_mricore: cannot open shared object file: No such file or directory): Bad file descriptor
Abandon

Client side:

pierreb@IHUSUX001:~$ gadgetron_ismrmrd_client -f testdata.h5
Gadgetron ISMRMRD client
-- host            :      localhost
-- port            :      9002
-- hdf5 file in   :      testdata.h5
-- hdf5 group in   :      /dataset
-- conf            :      default.xml
-- loop            :      1
-- hdf5 file out   :      out.h5
-- hdf5 group out :      2020-05-27 12:24:16
terminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::system::system_error> >'
what(): read: Connection reset by peer
Error caught: send_ismrmrd_acq failed ...
terminate called recursively
Abandon

Pierre Bour

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May 27, 2020, 7:54:37 AM5/27/20

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as suggested by David through Valery

If you have a local gadagetron installed run the command xargs rm < install_manifest.txt

in gadgetron/build/ folder

It has solved my issue

Quentin Lebret

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May 27, 2020, 8:17:27 AM5/27/20

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That previous bugfix does not work for me, i cannot find the install_manifest.txt on my computer.

Any other idea? Thanks

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