Hi everyone
I am a Ph.D scholar trying to run mmpbsa for my protein ligand complex. I have already installed gromacs 1.5.1. Now I am installing APBS according to this link
http://rashmikumari.github.io/g_mmpbsa/when I give this command to install ABPS
cmake -DCMAKE_INSTALL_PREFIX=/opt/apbs -DENABLE_BEM=off -DENABLE_iAPBS=on ..
I get this error
CMake Warning at CMakeLists.txt:231 (message):
Did not find fetk
CMake Warning at CMakeLists.txt:242 (message):
External maloc library was not found.
-- Looking for include file maloc/maloc.h
-- Looking for include file maloc/maloc.h - not found
CMake Warning at CMakeLists.txt:255 (message):
External maloc headers not found.
-- Using internal contributed maloc library
-- Inline functions enabled
-- Checking for OpenMP
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- OpenMP support enabled
libs: -L/home/dr/Downloads/apbs-pdb2pqr/apbs/build/lib -lapbs_geoflow-lmaloc-lm-fopenmp
-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files
-- With library dependencies -L/home/dr/Downloads/apbs-pdb2pqr/apbs/build/lib -lapbs_geoflow;-lmaloc;-lm;-fopenmp
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files
-- With library dependencies -L/home/dr/Downloads/apbs-pdb2pqr/apbs/build/lib -lapbs_geoflow;-lmaloc;-lm;-fopenmp
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files
-- With library dependencies -L/home/dr/Downloads/apbs-pdb2pqr/apbs/build/lib -lapbs_geoflow;-lmaloc;-lm;-fopenmp;apbs_generic;apbs_pmgc
-- Added apbs_mg
CMake Error at src/CMakeLists.txt:49 (add_subdirectory):
add_subdirectory given source "geoflow" which is not an existing directory.
--
--
-- -L/home/dr/Downloads/apbs-pdb2pqr/apbs/build/lib -lapbs_geoflow;-lmaloc;-lm;-fopenmp apbs_generic;apbs_pmgc;apbs_mg
--
-- -std=c99
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs_generic;apbs_mg;apbs_pmgc
-- Building manip
-- libraries: apbs_generic;apbs_mg;apbs_pmgc
-- Installing maloc headers
-- Building of iAPBS interface enabled
-- Configuring incomplete, errors occurred!
Pease help me out of this problem.
Regards
Neelam Wafa