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Jonas Ghouse
May 7, 2020, 3:29:55 AM5/7/20
to FUMA GWAS users
Dear Kyoko,
Thanks for this awesome tool, really cool.
Thanks for this awesome tool, really cool.
I seem to encounter ERROR5 again and again, and I can't really figure out why. My lead snps is genome-wide significant.
My job IDs are: 79311 and 79156 (they are both identical).
Hope that you can help
Thank you,
Thank you,
Jonas
DP Wightman
May 7, 2020, 4:33:21 AM5/7/20
to FUMA GWAS users
Hi Jonas,
I had a look at the rsIDs and positions of your top SNPs and it seems like the positions are on build hg38. You can liftover them over to GRCh37/hg19 and then it should work. You can also remove the chr and position columns from your input file and FUMA will match your data to the reference using the rsIDs. The liftover would be preferable because it seems that not all your SNPs have rsIDs.
Cheers,
Doug
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