SNPs in Chr6 disappeared

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Zhichong Wu

Aug 28, 2023, 2:07:33 PMAug 28
to FUMA GWAS users
Hi, Thank you so much for this very useful tool.
I upload a file and no error was reported, however, I find no SNPs in chr6 were presented in the results(such as not shown Manhattan Map). I have checked that there are many SNPs in Chr6 reach 5e-8 in the input GWAS summary statistics.

The Job id is: 276787

Many thanks,
Wu Zhichong

Aug 29, 2023, 3:36:27 AMAug 29
to FUMA GWAS users
Hi Wu Zhichong,

I looked at your job and found that many of the variants on chromosome 6 that were dropped during rsID annotation should not have been dropped. Can you send me your input file so I can look at what is going on? (


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