Job Failed With Error Code

[Julia Zawadzka]

I’m encountering a persistent “Ok, Please check your input file format” when uploading a GWAMA meta-analysis result to SNP2GENE and Error 001 when I manage to run it ( which is also a challange), even though the file appears to follow all required specifications.

I’ve prepared and validated the file carefully:

• Format: tab-delimited, gzipped (.tsv.gz)

• Columns: CHR, BP, A1, A2, EAF, BETA, SE, P

• Genome build: GRCh37 (hg19)

• Verified:

  • consistent columns per row

  • no missing CHR/BP/A1/A2 values

  • no NA or . in numeric fields

  • p-values are within (0, 1] (replaced 0.0 with 1e-300)

  • confirmed gzip integrity via file and gzcat

The file uploads successfully, but the job terminates with Error 001 before processing begins. 

Could you please help identify what might be triggering this format error on your end?
I can share the first few lines of the file for inspection if helpful. Job number 681632.

I also tried using the same file for which Ive run the job before and fails with the same scenario.

[Tanya Phung]

Hi Julia, 

This is the error of your job:
The following header(s) was not detected in your input file: N

Best,
Tanya

[Julia Zawadzka]

Hello Tanya, 

Thank you! 

I tried rerunning the job and made sure the col is there but I get an error again.

This job is now 682579.

Could you please provide error message?

Best,

Julia

[Tanya Phung]

The following header(s) was not detected in your input file: SE, BETA, N