FUMA magma.genes.out p-value

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Lorena Citterio

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Jul 25, 2025, 6:10:50 AMJul 25

to FUMA GWAS users

Hi,

I have a question about the meaning of P reported in the magma.genes.out file.

How is it calculated and what is its meaning?

Thanks in advance

Lorena

Tanya Phung

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Jul 28, 2025, 4:09:58 PMJul 28

to FUMA GWAS users

Hi Lorena,

For MAGMA specific questions, you can consult the MAGMA manual and/or send a message to the developers of MAGMA, as I do not support MAGMA.
MAGMA manual: https://cncr.nl/research/magma/