ERROR 001

[Amber J Rhee]

Hello,

I'm having trouble with an Error 001. Job ID is 665234. It is a gzipped file. I believe I have the minimum-required columns. I am lacking a column for ORs as the output was from a BOLT-LMM with a quantitative trait as the outcome, but submitted all other columns. Is the problem the lack of an OR column? Or is it something else?

Thank you!

[Brandon Sanzo]

Hi Amber,

In you hadn't heard from anyone, error 001 means that the input file was not correct.

Trouble shooting guide:
https://groups.google.com/g/fuma-gwas-users/c/N3HCEXBJ8Iw 


I would  refer to the input file preparation section to see what may be the issue with your submission:

https://fuma.ctglab.nl/tutorial#prepare-input-files

These are the mandatory columns

Mandatory columns
The input file must include a P-value and either an rsID or chromosome index + genetic position on hg19 reference genome. When either chromosome or position is missing, they are extracted from dbSNP build 146 based on rsID. In this case, input rsID is updated to dbSNP build 146. When rsID is missing, it is extracted from dbSNP build 146 based on chromosome and position. The column of chromosome can be a string such as "chr1" or just an integer such as 1. When "chr" is attached, this will be removed in output files. When the input file contains chromosome X, this will be encoded as chromosome 23, however, the input file can contain "X".

Hope this helps!

-Brandon