Request for Assistance with ERROR006 on FUMA Job 636913

[leo zw]

Dear FUMA Support Team,

I hope this message finds you well.

I am currently using FUMA for my analysis and encountered an issue with job ID 636913, which returned an ERROR006 message. I am unsure about the cause of this error and would appreciate your guidance on how to resolve it.

I have already sent the error log file to fuma....@gmail.com for your reference.

Could you please provide any insights or instructions on what this error means and how I can fix it? If you need any additional information or files from my side to help with troubleshooting, please let me know.

Thank you very much for your support and assistance.

Best regards,
Leo

[Tanya Phung]

Hi Leo, 

Your issue is the same as the issue answered here: https://groups.google.com/g/fuma-gwas-users/c/JNKGCFgO_Ng/m/Io8TJxaTAgAJ

Specifically, there are 5 rows where chr:pos:a1:a2 are the same but with different rsID: 

19      11526765        G       T       rs167479        6.11329118632915e-08    632709
19      11526765        G       T       rs2487644119    1.36162681974593e-19    309154
19      11526765        G       T       rs2512459460    1.36162681974593e-19    309154
19      11526765        G       T       rs748261393     1.36162681974593e-19    309154
19      11526765        G       T       rs773574027     1.36162681974593e-19    309154

For the reference panel that you selected (1KG EUR), this is the variant in the reference panel used by FUMA: 
19      11526765        19:11526765:G:T rs167479

So you may choose to keep just the  rs167479 variant or remove all 5 variants before running SNP2GENE. 

As a test, I removed these 5 variants completely and there was no issue. However, you might want to look into why this is the case in your dataset. 

Best,
Tanya