MAGMA cell type-specific regressions, dataset reference

[Nóra Eszlári]

Dear FUMA Team,

Dear Tanya,

I would have just a quick question regarding MAGMA cell-type specific gene property analyses.

I cannot find any reference for the "_Aldinger2021_PrenatalCerebellum_Human_" database here:

https://fuma.ctglab.nl/tutorial#datasets

This "Aldinger, 2021" dataset must be based on (and can be cited on) this paper, isn't it?:

https://pmc.ncbi.nlm.nih.gov/articles/PMC8338761/

Thank you a lot in advance,

Nóra Eszlári.

[Tanya Phung]

Hi Nora, 

You can check the updates here: https://fuma.ctglab.nl/updates

Specifically: https://github.com/tanyaphung/scrnaseq_viewer/blob/main/notes/4_Aldinger_2021_notes.md

Best,
Tanya

[Mingjian Shi]

Hi Tanya,

When I ran FUMA cell type-specific analysis, there isERROR:timeout, the Job ID is 655013. May I get assistance to resolve it?

Thanks,

Mingjian