ERROR:003 after many attempts

[Vasile Foris]

Dear FUMA team,

I keep getting ERROR:003 for the following jobs: 

638333, 638339, 638342, 638346.

Here are the already implemented suggestions from previous discussions that still result in ERROR:003:

1. The pos column has an integer format.

2. Colnames: "SNP" "CHR" "BP" "A1" "A2" "P" "Beta" "SE"

3. Scientific notations removed

4. Colnames defined.

I would really appreciate your feedback.

Thank you and best wishes,

Laszlo

[Tanya Phung]

Hi Laszlo, 

This is your error: 

chrSize = [max(GWAS[GWAS[:,chrcol].astype(int)==x, poscol].astype(int)) for x in range(1,24) if x in chroms]
ValueError: cannot convert float NaN to integer

So there could be rows where either the chromosome column and/or the position columns are empty or NA. 

Best,
Tanya