.genes.annot file download

[Shannon]

Dear FUMA Team,

I have used FUMA to run MAGMA gene set analysis. And I was wondering if the .genes.annot file is able to be downloaded?

The reason I am asking is that I am trying to determine exactly which SNPs were matched to each gene. While I can look up the number of SNPs per gene and the coordinates of the genes in magma.genes.out and magma.gsa.sets.genes.out, I cant find the specific SNP IDs. I can of course look them up in my summary statistics, but it seems like some SNPs were excluded at some stage by MAGMA, I guess because they are not present in the reference file or some other QC step.

Kind regards,

Shannon

[Tanya Phung]

Hi Shannon, 

No, the file .genes.annot is not available for download. 

But I can send you if you need. Please send: 
- your email address

- jobID

Best,
Tanya