Plink2 001 error

[Julien Delages]

Dear FUMA team,

I have tried many approach to run jobs that encountered ERROR : 001.

Here are the jobs' ID : 575211, 575202, 575108, 564301

Jobs 575202, 575108 are from the same file launched twice.

Jobs 575211, 564301 are from the same sumstats (coming from Plink 2.0) but I tried different settings.

I look at the type of column POS which is int64 as required, and tried to change the name of the columns or specify in the job submission for each required column its name in my sumstats. All sumstats are .gz extension and jobs 575202, 575108 are in hg19 coordinates.

Thank you in advance,

Julien

[Tanya Phung]

Hello, 

Job 575211 error: 

The following header(s) was not detected in your input file: CHROM, N

Job 575202 error:

The following header(s) was not detected in your input file: N

Job 575108 error:

The following header(s) was not detected in your input file: N

Job 564301 error:

The following header(s) was not detected in your input file: N

Best,
Tanya

[Julien Delages]

Hi,

Thank you for your answer!

It appears that I have 2 columns for N one for the case and one for the control.

Is there a way to specify more than one column in N field ?

Thanks in advance!

Best,

Julien

[Tanya Phung]

You can read up more about N at the submission page here: 

or from the tutorial: https://fuma.ctglab.nl/tutorial#snp2gene