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Error:005

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menghua yang

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Jun 26, 2024, 12:30:41 PM6/26/24
to FUMA GWAS users
Good morning, I have uploaded some jobs to FUMA and it has returned error 005 stating that it has not found any significant SNPs (threshold e-6), however there are significant SNPs in the job data and I don't know what is really happening. I'm leaving the IDs here in case you can take a look. 
ID:  499815

Thank you very much.

Tanya Phung

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Jun 26, 2024, 5:20:16 PM6/26/24
to FUMA GWAS users
Hello, 

This is the p value of the top 10 SNPs in your file: 
p
0.00118867
0.0192917
0.0244946
0.0889693
0.0961147
0.113895
0.147393
0.172754
0.182953
0.222144

As you can see, these p values are >10e-6.

Are there variants in your input files where the p values <10e-6? On the manhanttan plot, are there variants that pass the threshold? 

Finally, please make sure to go through the guide here to better understand your issue: https://groups.google.com/g/fuma-gwas-users/c/N3HCEXBJ8Iw

Thank you.  

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