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Kia Ora there,
I have a build 38 METAL file which I uploaded to SNP2GENE with the appropriate column names but it won't allow me to select the build 38 option.
Could you pleasehelp?
Nga mihi
Mohan
Brandon Sanzo
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Apr 3, 2024, 3:40:54 PMApr 3
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They disabled build 38 after finding errors after their update. I believe they're working on it now, but you'll have a better time updating your file to hg19 then running FUMA.
Best,
-Brandon
Mohan Krishnan
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Apr 5, 2024, 1:38:06 PMApr 5
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Is there an R version that I can run the SNP2GEN function in. I ask this because I have 500 phenotypes to run and I was thinking I can create a loop?
Nga mihi
Mohan
fuma.ctglab
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Apr 8, 2024, 5:42:30 AMApr 8
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Hello,
This is currently not possible at the moment.
Thank you, FUMA
Kevin Lu
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May 6, 2024, 4:50:15 PMMay 6
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Could we use build now? Thank you.
Kevin Lu
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May 6, 2024, 4:51:10 PMMay 6
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Could we use build 38 now? Thank you.
Marijn Schipper
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May 7, 2024, 2:37:19 AMMay 7
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Hi Kevin,
We are still working on this implementation. We recommend remapping your SNPs to rsID or to GRCh37 positions and uploading those to FUMA.
Best, Marijn
Op maandag 6 mei 2024 om 22:51:10 UTC+2 schreef Kevin Lu: