build 38

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Mohan Krishnan

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Apr 3, 2024, 3:36:22 PMApr 3
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Kia Ora there,

I have a build 38 METAL file which I uploaded to SNP2GENE with the appropriate column names but it won't allow me to select the build 38 option. 

Could you pleasehelp?

Nga mihi
Mohan

Brandon Sanzo

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Apr 3, 2024, 3:40:54 PMApr 3
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They disabled build 38 after finding errors after their update. I believe they're working on it now, but you'll have a better time updating your file to hg19 then running FUMA. 

Best, 

-Brandon

Mohan Krishnan

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Apr 5, 2024, 1:38:06 PMApr 5
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Is there an R version that I can run the SNP2GEN function in. I ask this because I have 500 phenotypes to run and I was thinking I can create a loop?

Nga mihi
Mohan

fuma.ctglab

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Apr 8, 2024, 5:42:30 AMApr 8
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Hello, 

This is currently not possible at the moment. 

Thank you,
FUMA

Kevin Lu

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May 6, 2024, 4:50:15 PMMay 6
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Could we use build now? Thank you.

Kevin Lu

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May 6, 2024, 4:51:10 PMMay 6
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Could we use build 38 now? Thank you.

Marijn Schipper

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May 7, 2024, 2:37:19 AMMay 7
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Hi Kevin,

We are still working on this implementation.
We recommend remapping your SNPs to rsID or to GRCh37 positions and uploading those to FUMA.

Best,
Marijn

Op maandag 6 mei 2024 om 22:51:10 UTC+2 schreef Kevin Lu:
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