Error:005

[Sruti Patel]

Hello,

For my job ID: 733507, I received the Error:005. A Manhattan plot was created that shows 3 SNPS that are genome wide significant but the results section shows nothing (no significant SNPs or mapped genes). We checked the error FAQ to see if we made a mistake inputting the file but don't see what could be causing the error. Would appreciate your help thank you! 

Best,

Sruti

[Tanya Phung]

Hi Sruti, 

For the top 3 SNPs in your file (rs543656214, rs529667606, rs193243744), did you check if they exist in the reference panel that you selected? 

You can check a previous answer here: https://groups.google.com/g/fuma-gwas-users/c/-PFx2mEvhvo/m/YGQKk17EAgAJ

In checking, you need to make sure that you are using the correct ancestry that you selected for your job. 

Best,
Tanya