Question about mapped gene

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Yuhan Cui

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Jan 20, 2026, 2:26:35 PMJan 20

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Dear FUMA team,

I want to ask questions about my Job ID: 622453. For SNP rs189256817, in Results -> SNPs(annotations), the Nearest gene shows HABP2; in Results -> Mapped Genes, the SNP has been mapped to HABP2 and NRAP. I want to know why gene NRAP didn’t show in the SNPs(annotations) tab? HABP2 and NRAP both are my findings in this GWAS analysis, correct?

Thanks,

Yuhan

Tanya Phung

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Jan 22, 2026, 3:57:57 PMJan 22

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Hi Yuhan,

In Results -> SNPs(annotations), the Nearest gene, the nearest gene is HABP2 because the snp's position overlaps with the range of this gene.

SNP rs189256817 position: 115344875. This overlaps with the range of the gene HABP2: 115310596 - 115349361. You can also see it in this image:

Screenshot 2026-01-22 215350.png

For the mapping step, you used the default parameters for position mapping, which also map SNPs to gene within 10kb:
Screenshot 2026-01-22 215658.png

In this case, the SNP rs189256817 is within 10kb of the range of the gene NRAP (115348475 - 115423886).