ERROR:cellType

[Noah Cook]

Dear FUMA users, 

I successfully ran the SNP2GENE while selecting to run MAGMA analysis (JobID: 681291). Then I submitted the cell-type job of that result, using the SNP2GENE and the genes.raw file from MAGMA (two separate job submissions). For both of the jobs I get the same error, ERROR:cellType.

JobIDs are:
681292
681295

Any help would be greatly appreciated.

Thanks

[Tanya Phung]

Hi Noah, 

In your jobs, the dataset 503_NM2024_Human_2024_PrimaryMotorCortex_level1 could not be run with your input summary statistics. This is the MAGMA error: 
ERROR - loading gene-level data: no valid gene sets or covariates found in input files

Maybe you can try again with excluding this dataset from your analysis. 

Best,
Tanya