User-defined r^2 not kept for new jobs

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jam...@broadinstitute.org

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Mar 4, 2019, 10:42:57 AM3/4/19
to FUMA GWAS users
Minor issue. You provide the nice feature where we can re-use settings from one job for another job. However, one setting that does not seem to persist is the r^2 value*, which always defaults back to 0.6 rather than the r^2 used in the original job. Again, just a minor thing, thought I'd mention it in case it's not intentional. Wonderful tool.

Thanks!

James

* = Specifically, this is under 2. Parameters for lead SNPs and candidate SNPs identification: "r2 threshold to define LD structure of lead SNPs (≥)"

Kyoko Watanabe

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Mar 4, 2019, 11:56:43 AM3/4/19
to FUMA GWAS users
Hi James,

Thank you for letting me know!
The bug has been fixed now, it should load r2 threshold correctly.

Best,
Kyoko
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