Minor issue. You provide the nice feature where we can re-use settings from one job for another job. However, one setting that does not seem to persist is the r^2 value*, which always defaults back to 0.6 rather than the r^2 used in the original job. Again, just a minor thing, thought I'd mention it in case it's not intentional. Wonderful tool.
Thanks!
James
* = Specifically, this is under 2. Parameters for lead SNPs and candidate SNPs identification: "r2 threshold to define LD structure of lead SNPs (≥)"