Snp2gene ERROR:001
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arpan nibmg
Apr 8, 2024, 2:17:38 AMApr 8
to FUMA GWAS users
Dear FUMA team,
I recently submitted two jobs (Job ID: 470605, 470608) to the server. Unfortunately, the jobs encountered the ERROR:001. I would greatly appreciate your assistance in resolving this error.
Thank you,
I recently submitted two jobs (Job ID: 470605, 470608) to the server. Unfortunately, the jobs encountered the ERROR:001. I would greatly appreciate your assistance in resolving this error.
Thank you,
Arpan
fuma.ctglab
Apr 8, 2024, 5:30:56 AMApr 8
to FUMA GWAS users
Dear Arpan,
rsid variant.y chr.y pos.y ref.y alt.y varid.y info.y minor_allele.y minor_AF.y beta.y se.y tstat.y p_value_hdl_male
1 rs185724698 10:100002378:T:C 10 100002378 T C 10:100002378_T_C 0.877339 C 0.0017402 -0.031161 0.014466 -2.1541 0.031235
Job 470605:
In this job, it looks like there are 14 columns in the header but 15 columns in the actual data itself:
In this job, it looks like there are 14 columns in the header but 15 columns in the actual data itself:
rsid variant.y chr.y pos.y ref.y alt.y varid.y info.y minor_allele.y minor_AF.y beta.y se.y tstat.y p_value_hdl_male
1 rs185724698 10:100002378:T:C 10 100002378 T C 10:100002378_T_C 0.877339 C 0.0017402 -0.031161 0.014466 -2.1541 0.031235
I am guessing that you obtained this from R. When saving an outfile file from R, you need to set: row.names = F. See: https://stackoverflow.com/questions/2478352/write-table-writes-unwanted-leading-empty-column-to-header-when-has-rownames
Similar issue with job 470608.
Good luck,
FUMA
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