Snp2gene ERROR:001

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arpan nibmg

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Apr 8, 2024, 2:17:38 AMApr 8
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Dear FUMA team,

I recently submitted two jobs (Job ID:   470605470608) to the server. Unfortunately, the jobs encountered the ERROR:001. I would greatly appreciate your assistance in resolving this error.

Thank you,
Arpan

fuma.ctglab

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Apr 8, 2024, 5:30:56 AMApr 8
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Dear Arpan, 

Job 470605: 
In this job, it looks like there are 14 columns in the header but 15 columns in the actual data itself: 

rsid variant.y chr.y pos.y ref.y alt.y varid.y info.y minor_allele.y minor_AF.y beta.y se.y tstat.y p_value_hdl_male
1 rs185724698 10:100002378:T:C 10 100002378 T C 10:100002378_T_C 0.877339 C 0.0017402 -0.031161 0.014466 -2.1541 0.031235

I am guessing that you obtained this from R. When saving an outfile file from R, you need to set: row.names = F. See: https://stackoverflow.com/questions/2478352/write-table-writes-unwanted-leading-empty-column-to-header-when-has-rownames

Similar issue with job 470608. 

Good luck,
FUMA

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