GENE2FUNC

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zainab rehman

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Apr 8, 2024, 12:30:54 AMApr 8

to FUMA GWAS users

Hi FUMA team!

I have a query regarding GENE2FUNC in FUMA. Correct me if I'm mistaken, but the gene sets utilized in GENE2FUNC are derived from SNP2GENE gene sets, right? My question arises from a trial I conducted using already published data to obtain Gene Ontology (GO) results in GENE2FUNC. However, I noticed that when I input the gene sets from the published data, I obtained fewer GO results compared to the original findings. Despite adjusting the parameters accordingly, I'm puzzled by this difference. Could you please help me understand what might be the issue?

Thanks in advance

fuma.ctglab

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Apr 8, 2024, 5:39:37 AMApr 8

to FUMA GWAS users

Hello,

In order to help, please provide as much details as possible. For example: which gene sets are you using, or what the parameters you used vs the parameters in the original findings. Could you provide a detailed description of what you did and what the discrepancies are? Without detailed information, we do not really understand what the issue is.

Thank you,