Job ID 557836: ERROR:005

[Sayem Borhan]

Hi,

I was trying to run the SNP2GENE (Job ID 557836) but got the ERROR:005. However, there was a significant SNP at the GWAS level. Can you please check and let me know what to do?

Thanks,

Sayem

[Tanya Phung]

Hi Sayem, 

The significant SNP in your input file is in hg38: 

The reference in FUMA is in hg19. Therefore, you need to use liftover to convert to hg19: 

After converting to hg19 coordinates, please resubmit your job. 

Best,
Tanya

[Sayem Borhan]

Thank you so much, Tanya. Do I need to liftover all the SNPs or just the significant one?

Best,

Sayem

[Tanya Phung]

Hi Sayem, 

Because currently FUMA does not support GRCh38, I would suggest you use hg19 for all of the variants. 

Thank you,
Tanya