eQTLs lack color

[Minoli Perera]

In the results files from my FUMA analysis, none of the eQTLs are colored by tissues.

[Tanya Phung]

Dear Minoli, 

Thank you for using FUMA and for your message. 

When viewing the plots, if you scroll down there is a message explaining why the colors are gray:

eQTLs: When eQTL mapping was performed and if there is any eQTL in the selected region, all eQTLs with user defined P-value threshold and tissue types are displayed. Of those eQTLs, eQTLs which did not used for eQTL mapping (eQTLs that were filtered by user defined parameters) are colored grey.

I hope this helps,
Tanya

[Minoli Perera]

thanks so much! that makes sense.