Issue gene-mapping in SNP2GENE

[Gunnar]

Hi Tanya!

I have a little issue with SNP2GENE gene-mapping of a specific genomic risk locus.
The lead SNP is located within a protein-coding gene, but ANNOVAR annotates it as „ncRNA_exonic“ (and then mapped as type „processed transcript“).
The regional plot likewise (incorrectly) classifies the entire gene as non-coding and it is not subsequently included in e.g. downstream GENE2FUNC / FLAMES analysis.. I sent you more details via mail.

I would really appreciate your help! 

Best
Gunnar