Invalid argument passed

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alan mejia

Aug 23, 2023, 8:26:37 AMAug 23
to FUMA GWAS users
Thanks for this great tool.
I have been getting this error since yesterday (below). To test if my submitted file is fine, I also tried with a file that was successfully submitted a couple of days ago, and it gave me an error too. 

Any thoughts?


(1/1) ErrorException

implode(): Invalid arguments passed

in S2GController.php line 352

at HandleExceptions->handleError(2, 'implode(): Invalid arguments passed', '/var/www/fuma/app/Http/Controllers/S2GController.php', 352, array('request' => object(Request), 'date' => '2023-08-23 14:16:24', 'jobID' => 275923, 'filedir' => '/data/fuma/jobs/275923', 'email' => '', 'numSchedJobs' => 0, 'queueCap' => 10, 'type' => 'text/plain', 'jobtitle' => 'None', 'submitJob' => object(SubmitJob), 'leadSNPs' => 'input.lead', 'GWAS' => 'input.gwas', 'regions' => 'input.regions', 'leadSNPsfileup' => 0, 'regionsfileup' => 0, 'addleadSNPs' => 1, 'chrcol' => 'chr', 'poscol' => 'ps', 'rsIDcol' => 'rs', 'pcol' => 'p_wald', 'eacol' => 'NA', 'neacol' => 'NA', 'orcol' => 'NA', 'becol' => 'beta', 'secol' => 'se', 'exMHC' => 0, 'MHCopt' => 'NA', 'extMHC' => 'NA', 'ensembl' => null))

at implode(':', null)in S2GController.php line 352

at S2GController->newJob(object(Request))

at call_user_func_array(array(object(S2GController), 'newJob'), array(object(Request)))in Controller.php line 54

at Controller->callAction('newJob', array(object(Request)))in ControllerDispatcher.php line 45

at ControllerDispatcher->dispatch(object(Route), object(S2GController), 'newJob')in Route.php line 219

at Route->runController()in Route.php line 176

at Route->run()in Router.php line 680

at Router->Illuminate\Routing\{closure}(object(Request))in Pipeline.php line 30

at Pipeline->Illuminate\Routing\{closure}(object(Request))in Authenticate.php line 28

at Authenticate->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in VerifyCsrfToken.php line 75

at VerifyCsrfToken->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in SubstituteBindings.php line 41

at SubstituteBindings->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in ShareErrorsFromSession.php line 49

at ShareErrorsFromSession->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in StartSession.php line 56

at StartSession->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in AddQueuedCookiesToResponse.php line 37

at AddQueuedCookiesToResponse->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in EncryptCookies.php line 66

at EncryptCookies->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in Pipeline.php line 104

at Pipeline->then(object(Closure))in Router.php line 682

at Router->runRouteWithinStack(object(Route), object(Request))in Router.php line 657

at Router->runRoute(object(Request), object(Route))in Router.php line 623

at Router->dispatchToRoute(object(Request))in Router.php line 612

at Router->dispatch(object(Request))in Kernel.php line 176

at Kernel->Illuminate\Foundation\Http\{closure}(object(Request))in Pipeline.php line 30

at Pipeline->Illuminate\Routing\{closure}(object(Request))in CheckForMaintenanceMode.php line 62

at CheckForMaintenanceMode->handle(object(Request), object(Closure))in Pipeline.php line 163

at Pipeline->Illuminate\Pipeline\{closure}(object(Request))in Pipeline.php line 53

at Pipeline->Illuminate\Routing\{closure}(object(Request))in Pipeline.php line 104

at Pipeline->then(object(Closure))in Kernel.php line 151

at Kernel->sendRequestThroughRouter(object(Request))in Kernel.php line 116

at Kernel->handle(object(Request))in index.php line 53

Aug 24, 2023, 3:46:10 AMAug 24
to FUMA GWAS users

This is an error that users report sometimes but we have never been able to replicate it. It is likely due to specific browser issues and stems from the fact that the ensembl version choice is being recorded as null ('ensembl' => null).

Previous users have reported that cntrl+click on ensembl version choice have helped solve the problem. Or loading parameters from a previous job which worked and then modifying them.

Let me know if either of these solutions work for you.


alan mejia

Aug 25, 2023, 7:42:41 AMAug 25
to FUMA GWAS users
It did work.

Thanks a lot

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