SNP2GENE xQTLsMap error

[Megan Skelton]

Job ID: 738581

Job type: SNP2GENE

ERROR:xQTLsMap

This job errored out: under xQTL I had selected eQTLs (all brain and nerve), sQTLs (same), pQTLs (brain and CSF), single-cell (brain). 
I have re-run it with the legacy eQTL mapping instead and that has completed successfully. Any suggestions please?

Thank you, and well done on the updates - exciting!

[Tanya Phung]

Hi Megan, 

I implemented a bugfix for this issue this morning. Could you please try again? 

Thank you,
Tanya

[Megan Skelton]

Yes, that's worked! Many thanks for the quick fix. 

[Anna Monistrol]

Hi Tanya, 

I just came across the same error Megan had. I successfully ran this same analysis yesterday with two other traits, but same xQTL for all, but this one failed. I retried this morning but failed again. Any idea what might be wrong?

JobID: 751706

Job type: SNP2GENE

Error type: ERROR:xQTLsMap

Thank yuo so much for your help!

[Tanya Phung]

Hi Anna, 

There might be a bug when processing the datasets relating to the pQTL. For now, could you try again without selecting the pQTL datasets? 

Could you also send me your input GWAS sumstat so that I can identify what the issue is? 

Thank you,
Tanya

[Anna Monistrol]

Hi Tanya, 

I have tried without the pQTL and it ran successfully, so there must be something in the pQTLs. I cannot send the input GWAS as I cannot attach documents here. If you provide me another address or another way to do it I will share them with you. 

Thank you so much for your help

Best regards,

[Tanya Phung]

Hi Anna, 

Could you please send to fuma....@gmail.com? 

Thank you,
Tanya