QTLs Analysis

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jin leon

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Jun 1, 2026, 4:36:59 AM (2 days ago) Jun 1
to FUMA GWAS users
Error:
FUMA an error occurred

This is unfortunate! An error occurred during the process of your xqtls job (job ID: 740302, job title: escc1).
ERROR:inputGwasHeader

My file was created following the instruction https://fuma-docs.readthedocs.io/en/latest/qtl/prepare_input_files.html#prepare-input-qtl:

CHR POS REF ALT N BETA P MAF
10 94228285 A G 1155 0.516195181851644 0.000634484 0.137229
10 94253193 G T 1155 0.448939581693444 5.92428e-05 0.55974
10 94254865 C G 1155 0.447125151367457 7.38098e-05 0.567532
10 94256036 C G 1155 0.447125151367457 7.38098e-05 0.567532
10 94263320 T C 1155 0.450980073394572 6.45953e-05 0.568398
10 94265734 A C 1155 0.661960904701362 1.97707e-06 0.166234
10 94266818 T C 1155 0.661960904701362 1.97707e-06 0.166234
10 94272980 C T 1155 0.859940461986134 0.000261097 0.0458874
10 94276223 T C 1155 0.675426085371889 1.27108e-06 0.164502
10 94278929 G A 1155 0.454972475343441 5.29438e-05 0.566234
10 94279840 G C 1155 0.454972475343441 5.29438e-05 0.566234
10 94283975 A G 1155 0.619043054552673 1.11469e-06 0.2329
10 94285156 G A 1155 0.619043054552673 1.11469e-06 0.2329
10 94285297 C T 1155 0.619043054552673 1.11469e-06 0.2329
10 94290594 A G 1155 0.688395911134459 8.10015e-07 0.165368
10 94291660 G T 1155 0.688395911134459 8.10015e-07 0.165368
10 94292754 C T 1155 0.688395911134459 8.10015e-07 0.165368
10 94292990 A G 1155 0.688395911134459 8.10015e-07 0.165368

I can't find out my input mistake.

Tanya Phung

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Jun 1, 2026, 5:17:41 AM (2 days ago) Jun 1
to FUMA GWAS users
Hi Jin, 

There was an issue with the path on the server and that's why the job failed. 

It should be fixed now so can you try again? 

Best,
Tanya

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