Error:Celltype

[Surati Kumari]

Hi,

I tried to perform Celltype analysis for all of my SNP2GENE dataset, however, other than 2 datast all of them returned error. I checked all three warnings for Error:Celltype : 

1. Does your selected SNP2GENE job have MAGMA output? If you can see manhattan plot for gene-based test, this should not be the problem.

2. Is your uploaded file an output of MAGMA gene analysis with an extension "genes.raw"?

3. Does your file contain Ensembl gene ID? Otherwise, don't forget to UNCHECK the option to indicate that you are using Ensembl gene ID.
   

however, I can see Manhatttan plot for gene-based test for all dataset. Since I selected input directly from SNP2GENE module, I believe it has taken genes.raw file only, and even though I tried to perform the celltype analysis by manually passing magma.genes.raw (Job ID :690718), it still gave an error. 

Please help.

Thanks in advance.