Error 001 help - Job 766642

[Aoife]

Hi,

I would like to request support about my job. I have given the name of files and the error indicates that the error that these headers were not detected (see below):

2026-08-28 09:47:29,233 [INFO] __main__: User input for chrcol: CHROM
2026-08-28 09:47:29,234 [INFO] __main__: User input for poscol: POS
2026-08-28 09:47:29,234 [INFO] __main__: User input for rsIDcol: SNP
2026-08-28 09:47:29,234 [INFO] __main__: User input for pcol: P
2026-08-28 09:47:29,234 [INFO] __main__: User input for neacol: A2
2026-08-28 09:47:29,234 [INFO] __main__: User input for eacol: A1
2026-08-28 09:47:29,234 [INFO] __main__: User input for becol: BETA
2026-08-28 09:47:29,234 [INFO] __main__: User input for secol: SE
2026-08-28 09:47:29,234 [INFO] __main__: User input for Ncol: NEFF_PERSNP
2026-08-28 09:47:29,238 [INFO] __main__: Input file header: ['"CHROM"', '"POS"', '"SNP"', '"A1"', '"A2"', '"beta"', '"SE"', '"P"', '"NGT"', '"FCAS"', '"FCON"', '"IMPINFO"', '"NEFFDIV2"', '"CASES_N"', '"CONTROLS_N"', '"DIRE"', '"NEFFx2"', '"F_A1_Total"', '"MAF"', '"Neff_persnp"']
2026-08-28 09:47:29,238 [ERROR] __main__: The following header(s) was not detected in the input file: CHROM, SNP, POS, A2, A1, P, SE, BETA, NEFF_PERSNP

Do my headers need to be capital letters? I thought the headers were case insensitive?

Best,

Aoife 

[Tanya Phung]

Hi, 

This is because there are extra quotation around each value such as "CHROM" in your header: 

https://fuma-docs.readthedocs.io/en/latest/snp2gene/prepare_input_files.html

[Aoife]

Hi Tanya,

Thank you very much for the quick response and for pointing this out.

Best wishes,

Aoife