MAGMA analysis: Bonferroni corrected p values

[Lim Zhao Qin]

Hi FUMA team,

I am writing this referring to job ID 240822. The MAGMA gene-set analysis generated some gene sets from my data. However, after the Bonferroni correction, the p values are not significant.  Is there any approach like reducing the number of genes analysed to have decent p values after Bonferroni correction? 

Thank you.

Regards,

Zhao

[Tanya Phung]

Dear Zhao, 

Thank you for your message. Unfortunately it is not how MAGMA should be run/interpreted. For MAGMA specific analyses, we would direct you to the manual for more information: MAGMA manual. 

Thank you,

Tanya

[Lim Zhao Qin]

Dear Tanya,

Thank you!

Regards,

Zhao