subset of sumstat

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Ralph Porneso

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Aug 14, 2025, 10:06:54 AMAug 14
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hi,

I read in the guide that it is possible to upload a subset of the sumstats but that doesn't seem to work. I sent one containing 10-20 SNPs for annotation but I get the attached error message. The column names are correctly specified in the submission page. Any idea why this might be happening? I have annotated the full sumstat files for 4 different phenotypes and those work. 
Screenshot 2025-08-14 at 16.02.08.png
Thanks in advance,

Ralph
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Tanya Phung

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Aug 18, 2025, 6:37:53 AMAug 18
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Hi Ralph, 

I am sorry but this issue is not reproducible on my end. 

I was able to submit to FUMA with a file with 20 lines. 

Screenshot 2025-08-18 114906.png

I can't attach a file to this message but this is the content of the file: 
cat CD_sig_small.gwas
rsID    chr     pos     ref     alt     p
rs2071987       1       7834026 G       A       2.8e-10
rs2797685       1       7879063 C       T       2.7e-10
rs697693        1       7886424 G       A       8.9e-10
rs2640908       1       7889941 C       T       2.8e-10
rs707472        1       7906008 G       T       4.5e-10
rs6656890       1       67458463        G       A       2.2e-15
rs12061545      1       67526029        A       G       1.8e-08
rs12097741      1       67528006        A       C       3e-08
rs4655679       1       67599657        C       T       1.5e-24
rs10789224      1       67605134        T       C       1.2e-25
rs7539795       1       67609446        A       G       3.2e-08
rs4655683       1       67611613        G       A       3.3e-21
rs6588245       1       67611799        C       T       2.5e-08
rs10889657      1       67615487        T       C       1.3e-26
rs11209005      1       67618678        A       G       1.5e-26
rs12041056      1       67627260        C       T       2.7e-08
rs6682925       1       67631262        C       T       1.8e-08
rs6683039       1       67631333        C       T       3.6e-09
rs1884444       1       67633812        G       T       3.8e-08

Best,
Tanya
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