[Fuge-devel] FW: MGED 11 Meeting, Trentino, Italy : Abstract Submission deadline for oral presentations is June 10th
Hermida, Leandro
Didn't see fuge-devel on the mailing list so want to forward this to
everyone. Who plans on going to MGED this year? I will go, I believe
we should have a group there and do a poster or two on FuGE, the STKs,
etc. This will be an important and key event to promote awareness and
adoption of FuGE and the tools available as well as those being
developed.
Leandro
-----Original Message-----
From: Gavin Sherlock [mailto:sher...@genome.stanford.edu]
Sent: Thursday, June 05, 2008 23:54
To: Gavin Sherlock
Cc: microar...@ebi.ac.uk; MGED-mage; GENE-...@ITSSRV1.UCSF.EDU;
mged-on...@lists.sourceforge.net; microarr...@ebi.ac.uk;
uka...@arraysv1.pt.uwcm.ac.uk
Subject: MGED 11 Meeting, Trentino, Italy : Abstract Submission deadline
for oral presentations is June 10th
Dear Colleagues,
Apologies if you receive this more than once.
The MGED 11 abstract submission deadline for consideration for an oral
presentation is next Tuesday, June 10th.
Further information on MGED 11 is available at
http://www.mgedmeeting.org/
and other key dates are:
Notice of acceptance: June 25th
Early registration ends: June 30th
All abstract submission closes: August 5th
The scientific focus of the meeting will be high throughput
technologies - in particular microarrays and ultra high throughput
sequencing - and associated data handling issues, analysis techniques
and standards. We have lined up some outstanding speakers who will be
giving talks on these topics.
This year we will again be selecting half of the plenary speakers from
submitted abstracts, to encourage greater participation in the MGED
community. Continuing from last year, we will also be running a
poster competition, with prizes for the best posters presented by
graduate and postdoctoral students. Finally, we will be awarding up
to seven $1500 travel grants to graduate or postdoctoral students who
are US citizens traveling from the US.
We look forward to seeing you all in Trentino,
Sincerely,
The Microarray and Gene Expression Data (MGED) Society
------------------------------------------------------------------------
----------
MGED 11 Program
Sunday 31st Aug.
15:00 - Registration and Exhibit Area are open
Monday 1st Sept.
07:30- Registration opens
08:30- 09:00 Welcome, Introduction and organization details: Chris
Stoeckert Catherine Ball, Cesare Furlanello
ENCODE Session
09:00-10:00 Keynote Lecture: Ewan Birney
10:00-10:45 Plenary Lecture: Barbara Wold
10:45-11:15 Break
11:15-12:00 Plenary Lecture: Shirley Liu
12:00-12:30 Talks from Submitted abstracts (1)
12:30-14:00 Lunch
Wine Genomics Session
14:00-14:45 Plenary Talk: Claudio Moser
14:45-15:30 Talks from Submitted abstracts (2)
15:30-16:00 Break
16:00-16:45 Plenary Talk: Duccio Cavalieri
16:45-17:45 Keynote Talk: Grant Cramer
18:00-20:00 Welcome cocktail
21.00 Public Science Conference I
Tuesday 2nd Sept.
Human Disease Session
09:00-10:00 Keynote Lecture: Joe Gray
10:00-10:45 Plenary Lecture: Mike Bittner
10:45-11:00 Break
11:00-11:45 Plenary Lecture: Nigel Carter
11:45-12:30 Talks from Submitted abstracts (3)
12:30-14:00 Lunch
Quality and Standards in Action
14:00-14:15 Introduction and update on MGED Standards: Chris Stoeckert
14:15-14:30 MAGE-TAB Tools: Helen Parkinson/Tim Rayner
14:30-14:45 ISA-TAB and integrative standards: Susanna-Assunta Sansone
14:45-15:30 Title TBA (Semantic Web and Gene Expression): Alan
Ruttenberg
15:30-16:00 Break
16:00-18:00 Poster Session I
19:00-21:00 Conference Dinner
Wednesday 3rd Sept.
Learning from Microarray Data
09:00-10:00 Keynote Lecture: Naama Barkai
09:45-10:30 Plenary Talk: Rainer Spang
10:30-11:00 Break
11:00-11:45 Plenary Talk: Atul Butte
11:45-12:30 Talks from Submitted Abstracts (3)
12:30-14:00 Lunch
Functional Genomics and Systems Biology
14:00-15:00 Keynote Lecture : Stephen Oliver
15:00-15:30 Break
15:30-16:15 Talks from Submitted Abstracts (3)
16:15-17:00 Plenary Lecture TBA
17:00-19:00 Poster Session II
Close of Meeting, Final Announcements, Award of Poster Prizes
20.15 Public Science Conference 2
Thursday 4th Sept.
Workshops
8:30 - 11:30 Morning Parallel Sessions
* Data Analysis Tutorial: John Quackenbush and Roger Bumgarner
* Tutorial on using Bioconductor for Array Quality Assessment:
Audrey
Kauffmann and Wolfgang Huber
11:30 - 14:30 Gene Pattern tutorial: Ted Liefeld
14:30 - 17:30 Afternoon Parallel Sessions
* Using ArrayExpress Tutorial: Gabriella Rustici andMisha
Kapushesky
* EMERALD Workshop on Array Quality Assessment Methods: Marc
Salit
and Wolfgang Huber
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Susanna
good plan indeed.
On this matter I will give a short presentation on (integrative)
standards and will also refer to FuGE.
So if there is a poster I can point the audience to that would be great!
Thanks,
Susanna
Hermida, Leandro wrote:
--
Jones, Andy
I'm unlikely to be able to attend, but if you'd like to put in an abstract to do an oral presentation on FuGE that would be great...
Cheers
Andy
> -----Original Message-----
> From: fuge-deve...@lists.sourceforge.net [mailto:fuge-devel-
> bou...@lists.sourceforge.net] On Behalf Of Hermida, Leandro
> Sent: 06 June 2008 08:19
> To: fuge-...@lists.sourceforge.net
> Subject: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy : Abstract Submission
> deadline for oral presentations is June10th
>
Susanna
for the 'standard' session we will not select abstracts for presentations (but I am cc to Chris S who will chair it to be sure).
Definitely one or more posters will be very useful, as the poster session is right after the standard one.
Thanks,
Susanna
--
Hermida, Leandro
Hello,
Andy, why don’t we do a couple posters, one on the FuGE data standard and then I’ll do one on the STKs (XSD and database ones)?
leandro
Jones, Andy
If you’re happy to present both of them then fine with me J Otherwise one summary poster may be enough, unless anyone else is going?
Chris Taylor
hold a 'build your own model' roadshow and make xsd and db
schemata on the fly (that may of course go horribly wrong).
Just nice for people to see that something really exists and be
able to get touchy-feely with it...
Jones, Andy wrote:
> If you’re happy to present both of them then fine with me J Otherwise
> one summary poster may be enough, unless anyone else is going?
>
>
>
> *From:* fuge-deve...@lists.sourceforge.net
> [mailto:fuge-deve...@lists.sourceforge.net] *On Behalf Of
> *Hermida, Leandro
> *Sent:* 06 June 2008 10:01
> *To:* fuge-...@lists.sourceforge.net
> *Cc:* stoe...@pcbi.upenn.edu
> *Subject:* Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy :
> Abstract Submission deadline for oral presentationsis June10th
>
>
>
> Hello,
>
>
>
> Andy, why don’t we do a couple posters, one on the FuGE data standard
> and then I’ll do one on the STKs (XSD and database ones)?
>
>
>
> leandro
>
>
>
> *From:* fuge-deve...@lists.sourceforge.net
> [mailto:fuge-deve...@lists.sourceforge.net] *On Behalf Of *Susanna
> *Sent:* Friday, June 06, 2008 10:36
> *To:* fuge-...@lists.sourceforge.net
> *Cc:* stoe...@pcbi.upenn.edu
> *Subject:* Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino, Italy :
> Abstract Submission deadline for oral presentations is June10th
>
>
>
> Hi Andy,
> for the 'standard' session we will not select abstracts for
> presentations (but I am cc to Chris S who will chair it to be sure).
> Definitely one or more posters will be very useful, as the poster
> session is right after the standard one.
> Thanks,
> Susanna
>
> Jones, Andy wrote:
>
> Hi Leandro,
>
> I'm unlikely to be able to attend, but if you'd like to put in an abstract to do an oral presentation on FuGE that would be great...
>
> Cheers
>
> Andy
>
>
>
>
>
>
>
>
>
>
>
> -----Original Message-----
>
> From: fuge-deve...@lists.sourceforge.net <mailto:fuge-deve...@lists.sourceforge.net> [mailto:fuge-devel-
>
> bou...@lists.sourceforge.net <mailto:bou...@lists.sourceforge.net>] On Behalf Of Hermida, Leandro
>
> Sent: 06 June 2008 08:19
>
> To: fuge-...@lists.sourceforge.net <mailto:fuge-...@lists.sourceforge.net>
>
> Subject: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy : Abstract Submission
>
> deadline for oral presentations is June10th
>
>
>
> Hi everyone,
>
>
>
> Didn't see fuge-devel on the mailing list so want to forward this to
>
> everyone. Who plans on going to MGED this year? I will go, I believe
>
> we should have a group there and do a poster or two on FuGE, the STKs,
>
> etc. This will be an important and key event to promote awareness and
>
> adoption of FuGE and the tools available as well as those being
>
> developed.
>
>
>
> Leandro
>
>
>
>
>
> -----Original Message-----
>
> From: Gavin Sherlock [mailto:sher...@genome.stanford.edu]
>
> Sent: Thursday, June 05, 2008 23:54
>
> To: Gavin Sherlock
>
> Cc: microar...@ebi.ac.uk <mailto:microar...@ebi.ac.uk>; MGED-mage; GENE-
>
> ARR...@ITSSRV1.UCSF.EDU <mailto:ARR...@ITSSRV1.UCSF.EDU>;
>
> mged-on...@lists.sourceforge.net <mailto:mged-on...@lists.sourceforge.net>; microarr...@ebi.ac.uk <mailto:microarr...@ebi.ac.uk>;
>
> uka...@arraysv1.pt.uwcm.ac.uk <mailto:uka...@arraysv1.pt.uwcm.ac.uk>
> Fuge-...@lists.sourceforge.net <mailto:Fuge-...@lists.sourceforge.net>
>
> https://lists.sourceforge.net/lists/listinfo/fuge-devel
>
>
>
>
>
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>
> Check out the new SourceForge.net Marketplace.
>
> It's the best place to buy or sell services for
>
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> _______________________________________________
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>
> Fuge-...@lists.sourceforge.net <mailto:Fuge-...@lists.sourceforge.net>
>
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>
>
>
> --
>
>
>
>
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> Check out the new SourceForge.net Marketplace.
> It's the best place to buy or sell services for
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--
~~~~~~~~~~~~~~~~~~~~~~~~
chris....@ebi.ac.uk
http://mibbi.sf.net/
~~~~~~~~~~~~~~~~~~~~~~~~
Chris Taylor
poster session, on a laptop (i.e., not trying to hijack a talk
session somewhere).
Hermida, Leandro
I will also have a poster on our FuGE system implementation, sysFusion,
and I would be happy to do demos of it and also the underlying EJB 3.0
STK which it uses. Andy, I will also present both posters if needed and
do my best to answer questions about the FuGE data standard poster, but
I know I will not be nearly as capable as you. Here at my institute
people have given me various real-world use cases and asked how it fits
into the model and sometimes I have trouble knowing exactly, but this is
definitely my ignorance as I have focused all my attention on developing
a database and software around the FuGE standard and this didn't
necessarily require knowing this (yet) :)
leandro
Hermida, Leandro
I would be happy to put together a poster on the FuGE STKs and present
this. Andy, if you would like to do a poster on the FuGE data standard
as written below I will do my best to present this poster as well. If
you feel both should be merged into a summary poster I am ok with that
too. I will then also have a sysFusion poster showing how we have used
one of the STKs to build a database and system using FuGE.