Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino, Italy : Abstract Submission deadline fororal presentationsis June10th
Hermida, Leandro
Hi all,
This sounds like a great idea. Thanks for forwarding the announcement to the
list! I've just gotten the initial OK for me to attend, too. As Leandro says, I
would be happy to help with a fuge stks poster, try to help with a fuge data
standards poster, or any combination/merging of the above (if required). I will
probably also submit an abstract for a SyMBA poster there, too (thanks for the
idea, Chris). If there is space in front of the posters, a live version of the
FuGE-OM would be great - good idea, Chris! If there is agreement, what should
the next step be?
thanks again :)
On Fri, Jun 6, 2008 at 12:24 PM, Hermida, Leandro <Leandro...@fmi.ch> wrote:
Oops, sorry if I wasn't clear, just reread what I wrote.
I would be happy to put together a poster on the FuGE STKs and present
this. Andy, if you would like to do a poster on the FuGE data standard
as written below I will do my best to present this poster as well. If
you feel both should be merged into a summary poster I am ok with that
too. I will then also have a sysFusion poster showing how we have used
one of the STKs to build a database and system using FuGE.
leandro
-----Original Message-----
From: fuge-deve...@lists.sourceforge.net
[mailto:fuge-deve...@lists.sourceforge.net]
On Behalf Of Hermida,
Leandro
Sent: Friday, June 06, 2008 13:03
To: fuge-...@lists.sourceforge.net
Subject: Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy : Abstract
Submission deadline fororal presentationsis June10th
Hi,
I will also have a poster on our FuGE system implementation, sysFusion,
and I would be happy to do demos of it and also the underlying EJB 3.0
STK which it uses. Andy, I will also present both posters if needed and
do my best to answer questions about the FuGE data standard poster, but
I know I will not be nearly as capable as you. Here at my institute
people have given me various real-world use cases and asked how it fits
into the model and sometimes I have trouble knowing exactly, but this is
definitely my ignorance as I have focused all my attention on developing
a database and software around the FuGE standard and this didn't
necessarily require knowing this (yet) :)
leandro
-----Original Message-----
From: fuge-deve...@lists.sourceforge.net
[mailto:fuge-deve...@lists.sourceforge.net]
On Behalf Of Chris
Taylor
Sent: Friday, June 06, 2008 12:35
To: fuge-...@lists.sourceforge.net
Subject: Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino, Italy :
Abstract Submission deadline for oral presentationsis June10th
How about someone demos something? Either show Symba, or maybe
hold a 'build your own model' roadshow and make xsd and db
schemata on the fly (that may of course go horribly wrong).
Just nice for people to see that something really exists and be
able to get touchy-feely with it...
Jones, Andy wrote:
> If you're happy to present both of them then fine with me J Otherwise
> one summary poster may be enough, unless anyone else is going?
>
>
>
> *From:* fuge-deve...@lists.sourceforge.net
> [mailto:fuge-deve...@lists.sourceforge.net]
*On Behalf Of
> *Hermida, Leandro
> *Sent:* 06 June 2008 10:01
> *To:* fuge-...@lists.sourceforge.net
> *Cc:* stoe...@pcbi.upenn.edu
> *Subject:* Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy :
> Abstract Submission deadline for oral presentationsis June10th
>
>
>
> Hello,
>
>
>
> Andy, why don't we do a couple posters, one on the FuGE data standard
> and then I'll do one on the STKs (XSD and database ones)?
>
>
>
> leandro
>
>
>
> *From:* fuge-deve...@lists.sourceforge.net
> [mailto:fuge-deve...@lists.sourceforge.net]
*On Behalf Of
*Susanna
> *Sent:* Friday, June 06, 2008 10:36
> *To:* fuge-...@lists.sourceforge.net
> *Cc:* stoe...@pcbi.upenn.edu
> *Subject:* Re: [Fuge-devel] FW: MGED 11 Meeting, Trentino, Italy :
> Abstract Submission deadline for oral presentations is June10th
>
>
>
> Hi Andy,
> for the 'standard' session we will not select abstracts for
> presentations (but I am cc to Chris S who will chair it to be sure).
> Definitely one or more posters will be very useful, as the poster
> session is right after the standard one.
> Thanks,
> Susanna
>
> Jones, Andy wrote:
>
> Hi Leandro,
>
> I'm unlikely to be able to attend, but if you'd like to put in an
abstract to do an oral presentation on FuGE that would be great...
>
> Cheers
>
> Andy
>
>
>
>
>
>
>
>
>
>
>
> -----Original Message-----
>
> From: fuge-deve...@lists.sourceforge.net
<mailto:fuge-deve...@lists.sourceforge.net>
[mailto:fuge-devel-
>
> bou...@lists.sourceforge.net
<mailto:bou...@lists.sourceforge.net>]
On Behalf Of Hermida, Leandro
>
> Sent: 06 June 2008 08:19
>
> To: fuge-...@lists.sourceforge.net
<mailto:fuge-...@lists.sourceforge.net>
>
> Subject: [Fuge-devel] FW: MGED 11 Meeting, Trentino,Italy :
Abstract Submission
>
> deadline for oral presentations is June10th
>
>
>
> Hi everyone,
>
>
>
> Didn't see fuge-devel on the mailing list so want to forward
this
to
>
> everyone. Who plans on going to MGED this year?
I will go, I
believe
>
> we should have a group there and do a poster or two on FuGE,
the
STKs,
>
> etc. This will be an important and key event to
promote awareness
and
>
> adoption of FuGE and the tools available as well as those
being
>
> developed.
>
>
>
> Leandro
>
>
>
>
>
> -----Original Message-----
>
> From: Gavin Sherlock [mailto:sher...@genome.stanford.edu]
>
> Sent: Thursday, June 05, 2008 23:54
>
> To: Gavin Sherlock
>
> Cc: microar...@ebi.ac.uk
<mailto:microar...@ebi.ac.uk>;
MGED-mage; GENE-
>
> ARR...@ITSSRV1.UCSF.EDU
<mailto:ARR...@ITSSRV1.UCSF.EDU>;
>
> mged-on...@lists.sourceforge.net
<mailto:mged-on...@lists.sourceforge.net>;
microarr...@ebi.ac.uk
<mailto:microarr...@ebi.ac.uk>;
>
> uka...@arraysv1.pt.uwcm.ac.uk
<mailto:uka...@arraysv1.pt.uwcm.ac.uk>
>
> Subject: MGED 11 Meeting, Trentino, Italy : Abstract
Submission
deadline
>
> for oral presentations is June 10th
>
>
>
> Dear Colleagues,
>
>
>
> Apologies if you receive this more than once.
>
>
>
> The MGED 11 abstract submission deadline for consideration
for an
oral
>
> presentation is next Tuesday, June 10th.
>
>
>
> Further information on MGED 11 is available at
>
> http://www.mgedmeeting.org/
>
> and other key dates are:
>
>
>
> Notice of acceptance: June 25th
>
> Early registration ends: June 30th
>
> All abstract submission closes: August 5th
>
>
>
> The scientific focus of the meeting will be high
throughput
>
> technologies - in particular microarrays and ultra high
throughput
>
> sequencing - and associated data handling issues, analysis
techniques
>
> and standards. We have lined up some outstanding
speakers who
will be
>
> giving talks on these topics.
>
>
>
> This year we will again be selecting half of the plenary
speakers
from
>
> submitted abstracts, to encourage greater participation in
the
MGED
>
> community. Continuing from last year, we will also be
running a
>
> poster competition, with prizes for the best posters
presented by
>
> graduate and postdoctoral students. Finally, we will
be awarding
up
>
> to seven $1500 travel grants to graduate or postdoctoral
students
who
>
> are US citizens traveling from the US.
>
>
>
> We look forward to seeing you all in Trentino,
>
>
>
> Sincerely,
>
>
>
> The Microarray and Gene Expression Data (MGED) Society
>
>
>
>
------------------------------------------------------------------------
>
> ----------
>
> MGED 11 Program
>
>
>
> Sunday 31st Aug.
>
>
>
> 15:00 - Registration and Exhibit Area are open
>
>
>
> Monday 1st Sept.
>
>
>
> 07:30- Registration
opens
>
> 08:30- 09:00 Welcome, Introduction and organization details:
Chris
>
> Stoeckert Catherine Ball, Cesare Furlanello
>
>
>
> ENCODE Session
>
> 09:00-10:00 Keynote Lecture: Ewan Birney
>
> 10:00-10:45 Plenary Lecture: Barbara Wold
>
> 10:45-11:15 Break
>
> 11:15-12:00 Plenary Lecture: Shirley Liu
>
> 12:00-12:30 Talks from Submitted abstracts (1)
>
>
>
> 12:30-14:00 Lunch
>
>
>
> Wine Genomics Session
>
> 14:00-14:45 Plenary Talk: Claudio Moser
>
> 14:45-15:30 Talks from Submitted abstracts (2)
>
> 15:30-16:00 Break
>
> 16:00-16:45 Plenary Talk: Duccio Cavalieri
>
> 16:45-17:45 Keynote Talk: Grant Cramer
>
>
>
> 18:00-20:00 Welcome cocktail
>
> 21.00 Public Science Conference I
>
>
>
> Tuesday 2nd Sept.
>
>
>
> Human Disease Session
>
> 09:00-10:00 Keynote Lecture: Joe Gray
>
> 10:00-10:45 Plenary Lecture: Mike Bittner
>
> 10:45-11:00 Break
>
> 11:00-11:45 Plenary Lecture: Nigel Carter
>
> 11:45-12:30 Talks from Submitted abstracts (3)
>
>
>
> 12:30-14:00 Lunch
>
>
>
> Quality and Standards in Action
>
> 14:00-14:15 Introduction and update on MGED Standards: Chris
Stoeckert
>
> 14:15-14:30 MAGE-TAB Tools: Helen Parkinson/Tim Rayner
>
> 14:30-14:45 ISA-TAB and integrative standards:
Susanna-Assunta
Sansone
>
> 14:45-15:30 Title TBA (Semantic Web and Gene Expression):
Alan
>
> Ruttenberg
>
> 15:30-16:00 Break
>
> 16:00-18:00 Poster Session I
>
>
>
> 19:00-21:00 Conference Dinner
>
>
>
> Wednesday 3rd Sept.
>
>
>
> Learning from Microarray Data
>
> 09:00-10:00 Keynote Lecture: Naama Barkai
>
> 09:45-10:30 Plenary Talk: Rainer Spang
>
> 10:30-11:00 Break
>
> 11:00-11:45 Plenary Talk: Atul Butte
>
> 11:45-12:30 Talks from Submitted Abstracts (3)
>
>
>
> 12:30-14:00 Lunch
>
>
>
> Functional Genomics and Systems Biology
>
> 14:00-15:00 Keynote Lecture : Stephen Oliver
>
> 15:00-15:30 Break
>
> 15:30-16:15 Talks from Submitted Abstracts (3)
>
> 16:15-17:00 Plenary Lecture TBA
>
> 17:00-19:00 Poster Session II
>
> Close of Meeting, Final Announcements, Award of Poster
Prizes
>
>
>
> 20.15 Public Science Conference 2
>
>
>
> Thursday 4th Sept.
>
>
>
> Workshops
>
> 8:30 - 11:30 Morning Parallel Sessions
>
> * Data Analysis Tutorial: John Quackenbush and Roger
Bumgarner
>
> * Tutorial on using Bioconductor for Array Quality
Assessment:
>
> Audrey
>
> Kauffmann and Wolfgang Huber
>
> 11:30 - 14:30 Gene Pattern tutorial: Ted Liefeld
>
> 14:30 - 17:30 Afternoon Parallel Sessions
>
> * Using ArrayExpress Tutorial: Gabriella Rustici
andMisha
>
> Kapushesky
>
> * EMERALD Workshop on Array Quality Assessment
Methods: Marc
>
> Salit
>
> and Wolfgang Huber
>
>
>
>
------------------------------------------------------------------------
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~~~~~~~~~~~~~~~~~~~~~~~~
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--
Thanks,
Allyson :)
Allyson Lister
Research Associate
Centre for Integrated Systems Biology for Ageing and Nutrition
Newcastle University
http://www.cisban.ac.uk
School of Computing Science
Newcastle University
Newcastle upon Tyne, NE1 7RU
Jones, Andy
This is a bit confusing, this email said it came from Leandro, presumably it’s actually from Allyson...?
Sounds like we should coordinate the posters / abstract writing a bit here. Leandro is planning to put a poster in on sysFusion, and Allyson one on Symba. I don’t think we need another two FuGE posters J
How about we put in a general FuGE abstract, describing the model itself, update on extensions and on tooling, for example taking some material from the workshop paper (which incidentally is just back with Norman so should be circulated a final time soon)? I’m happy to draft an abstract to submit before Tuesday but I won’t be able to actually do the poster or take it, so nearer the time we’d have to coordinate this. If anyone wants to give a demo of some FuGE software I’m sure this can be arranged ad hoc nearer the time.
Sound like a reasonable plan?
Andy
Hermida, Leandro
Hello,
Allyson sent me the mail because she was having problem with her Google Mail:
Hi Leandro,
Sourceforge seems to hate googlemail all of the sudden, and I can't get my post
through. Could you please forward this onto the list? thanks for letting us all
know about the mged meeting!
Andy, about submitting an abstract by Tuesday, I think Susanna said they will not select abstracts for talks for the Standards session so this deadline does not apply? The regular abstract deadline for posters is August 5th. Your proposal below sounds fine to me.
leandro
Susanna
> I think Susanna said they will not select abstracts for talks for the
> Standards session so this deadline does not apply?
Hi All,
correct, the abstract for poster in Aug 5th.
Thanks,
Susanna
Hermida, Leandro wrote:
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-- Susanna-Assunta Sansone, PhD NET Project - Coordinator www.ebi.ac.uk/net-project The European Bioinformatics Institute email: san...@ebi.ac.uk EMBL Outstation - Hinxton direct: +44 (0)1223 494 691 Wellcome Trust Genome Campus fax: +44 (0)1223 492 620 Cambridge CB10 1SD, UK room: A229