Integrated Food Ontology Workshop 15-19 August, 2022 in Jönköping, Sweden - Call for papers
Damion Dooley
Our apologies if you receive
this as a result of cross-posting!
This is the first call for presentation
and poster abstracts for the 3rd Integrated Food Ontology Workshop,
a hybrid virtual (streamed) and on-site workshop to be held at the Joint
Ontology Workshops 2022 event in Jönköping University, Jönköping, Sweden (JOWO,
https://www.iaoa.org/jowo/2022/ and https://ju.se/en/collaboration/events-and-conferences/conferences/jowo-2022.html . IFOW workshop details
will be available online at https://foodon.org/ifow-2022-workshop/. See past IFOW abstracts
and presentations
for 2020 and 2021 held in Bolzano at JOWO/ICBO.
Academic, agricultural and public health agencies are considering the benefits and complexities of adopting ontology in their research and data management and reporting infrastructure. What vocabulary, tool ecosystem and data models are needed to correlate agricultural treatments, nutritional data, eating patterns, biomarkers, pathogens, and phytochemical levels with disease and health phenotypes? This workshop seeks to define the coverage of the different ecological, agricultural, nutritional, dietary, public health, one health surveillance, food security, and trade domains that food-related ontologies are modelling, and the use of data translation tools for bringing legacy data into the ontology fold.
The workshop will have 3 hybrid (combination physical and virtual) sessions split into presentations of relevant ontologies / projects and their scope, followed by discussion and a break as schedule allows. We encourage people to consider this an opportunity to meet and connect with peers from interrelated disciplines, and to discover the full breadth of ontology research occurring in the food domain. Topics we welcome:
- Ontology in agriculture and the environment (modelling of crop treatments, field studies, farm practice, biosample testing for nutrient content, and impact of fertilizers, pesticides and toxins)
- Ontology in nutrition and food science, technology, and engineering including food product biotransformation from fungi, and bacteria, and how they are taken in the body through dietary eating patterns, and nutrition, fermentation and metabolomic modelling.
- Ontologies and their applications: How the public and private sector are using food related ontologies in their research and operations: database integration, process analysis, tools for ontology building, quality metrics.
Submission types
The workshop accepts and values original contributions in English in PDF format. All papers must be original and not submitted to or accepted by any other workshop or conference. All contributions will be peer-reviewed, and the review process will be managed in a collaborative and transparent manner. For 10 minute presentations + discussion:
- Full length research paper (up to 12 pages, excluding bibliography, published in JOWO conference proceedings)
- Early career submission (up to 6 pages, excluding bibliography, published in JOWO conference proceedings)
- Short abstract (2 pages, excluding bibliography, and not included in JOWO conference proceedings)
As well, shorter 2-3 page “Poster” presentations are accepted: format 5-10 min max + questions.
Deadlines
The IFOW organizing committee has set the following submission deadlines.
March 20, 2022 – 1st call
for papers
May 15 deadline for
presentation abstract and paper submission
June 15 presentation /
paper acceptance
June 30 poster submission
July
30 poster acceptance
August
5 paper camera-ready deadline
August 15+ workshop date
Please make your submission using EasyChair: https://easychair.org/conferences/?conf=jowo2022. Submission should be in PDF format following the CEUR-WS single column formatting guidelines. Download Latex and MS Word templates here: http://ceur-ws.org/Vol-XXX/CEURART.zip. An Overleaf Template is available here: https://www.overleaf.com/latex/templates/template-for-submissions-to-ceur-workshop-proceedings-ceur-ws-dot-org/wqyfdgftmcfw . See past JOWO CEUR proceedings for 2021 http://ceur-ws.org/Vol-2969/ and 2020 http://ceur-ws.org/Vol-2708/ .
For more information, contact damion...@sfu.ca.
Damion Dooley
Damion Dooley
Academic, agricultural and public health agencies are considering the benefits and complexities of adopting ontology in their research and data management and reporting infrastructure. What vocabulary, tool ecosystem and data models are needed to correlate agricultural treatments, nutritional data, eating patterns, biomarkers, pathogens, and phytochemical levels with disease and health phenotypes? This workshop seeks to define the coverage of the different ecological, agricultural, nutritional, dietary, public health, one health surveillance, food security, and trade domains that food-related ontologies are modelling, and the use of data translation tools for bringing legacy data into the ontology fold.
Damion Dooley
Academic, agricultural and public health agencies are considering the benefits and complexities of adopting ontology in their research and data management and reporting infrastructure. What vocabulary, tool ecosystem and data models are needed to correlate agricultural treatments, nutritional data, eating patterns, biomarkers, pathogens, and phytochemical levels with disease and health phenotypes? This workshop seeks to define the coverage of the different ecological, agricultural, nutritional, dietary, public health, one health surveillance, food security, and trade domains that food-related ontologies are modelling, and the use of data translation tools for bringing legacy data into the ontology fold.
For more information, contact damion...@sfu.ca.
Damion Dooley
For those attending remotely (but not involved in presenting), JOWO asks that you register via free "(Passive) online participation", and they will send those registrants a video zoom link.
OverviewAcademic, agricultural and public health agencies are considering the benefits and complexities of adopting ontology in their research and data management and reporting infrastructure. What vocabulary, tool ecosystem and data models are needed to correlate agricultural treatments, nutritional data, eating patterns, biomarkers, pathogens, and phytochemical levels with disease and health phenotypes? This workshop seeks to define the coverage of the different ecological, agricultural, nutritional, dietary, public health, one health surveillance, food security, and trade domains that food-related ontologies are modelling, and the use of data translation tools for bringing legacy data into the ontology fold.
The workshop will be in two hybrid (combination physical and virtual) parts:
Presentation Sessions Monday Aug 15 CET (GMT+2)Two presentation and discussion sessions about the development and application of ontologies and open graph databases towards agricultural production, food processing, ingredient and nutritional composition.
11am-12:15 IFOW Presentation and discussion
- Japanese Food Ontology (FGNHNS Alpha, Chihiro Higuchi)
- Progress and prospects for the Compositional Dietary Nutrition Ontology(CDNO, Liliana Andrés-Hernández)
- Linked open data for pesticides (PestOn ontology, Marco Medici)
2pm-3:15 IFOW Presentation and discussion
- Challenges in Ontological Modelling of Ingredient Substitution in Food Recipes (Agnieszka Lawrynowicz)
- The Protein Application Ontology (P-PRO, Hannelore Heuer)
- The Ontological How and Why – Action and Objective – of Planned Processes in the Food Domain (Damion Dooley; Tarini Naravane)
- Matching Food Items with FoodOn Identifiers in a Knowledge Base (Katherine Thornton)
A few hours of think-tank / white-boarding is planned on the topic of fermentation.
Monday Aug 15 CET (GMT+2)4pm-5pm CET: IFOW Fermentation Workshop: Alcohol By Volume (ABV) Modelling
- Chair: Robert Warren
- Review of ABV stakeholder communities
- Outline of the technical vs cultural and regulatory challenge
- Technical ABV – measurement points in a process model
- Regulatory aspect
- Ties into cultural norms (France, Canada/Provincial, US States)
- ABV as reported as in literature vs. GS1/Schema.org product group advertising
5:45pm-7:30 IFOW Fermentation Model and Beer Styles
- Chair: Francesco Vitali and Damion Dooley
- Technical Overview (yeast -> enzymatic level analysis)
- Ontologizing Beer Styles: we all call it “beer”!
- Technical: a beer as determined by fermentation process
- Cultural / Jurisdictional beer: layering onto technical hierarchy?
- Where the two views conflict?
- Characteristics of a beer style (e.g. Pilsner: water + light style= technical + historical)
- Summary
- Next steps: where and how should this ontologically-driven content be presented, and for which audiences?
The 2022 IFOW Organizing committee:
- Damion Dooley, Centre for Infectious Disease Genomics and One Health, SFU
- Rhiannon Cameron, Centre for Infectious Disease Genomics and One Health, SFU
- Lauren Chan, Oregon State University
- Duccio Cavalieri, University of Florence
- Robert Warren, Glengarry Agriculture
- Hande McGinty, Ohio University
- Matthew Lange, IC-FOODS
- Fernanda Dorea, Swedish National Veterinary Institute
- Francesco Vitali, Institute of Agricultural Biology and Biotechnology (IBBA)
Damion Dooley
https://ju-se.zoom.us/j/69514929419
Password: 213306
The presentation / workshop schedule is as previously posted, but is online here: https://foodon.org/ifow-2022-workshop/ and here: https://www.iaoa.org/jowo/2022/