Can't find the utility package to download FIVE

[Lorie-Marlène Brault Foisy]

Hi Aaron,

I've used GLM Flex fast4 to do a 3X3 repeated measures ANOVA. Everything worked well and I have some results (see image). 

I would like to download FIVE to visualize the interaction and main effects but I can't find the utility package.

Where can I download it? 

Thank you in advance,

Lorie

[Aaron Schultz]

I recently moved the old mrtools.mgh.harvard.edu to a new server.  Download links can now be found here: https://habs.mgh.harvard.edu/researchers/data-tools/downloads/

If you download the full package it should have everything needed for using FIVE.

-Aaron

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[Lorie-Marlène Brault Foisy]

Thanks for this quick answer!

I've downloaded the full package.

When I type FIVE at the command line, I get this error code:

Index exceeds matrix dimensions.

Error in openIMG (line 28)

[a b c] = fileparts(strtrim(fn(1,:)));

Error in FIVE (line 108)

    [I h] = openIMG(which('defaultUnderlay.nii'));

I've added all the folders in the package to my path. 

Do you have any idea what is the problem?

Thank you in advance!

Lorie

Le jeudi 13 août 2020 14:14:32 UTC-4, Aaron Schultz a écrit :

I recently moved the old mrtools.mgh.harvard.edu to a new server.  Download links can now be found here: https://habs.mgh.harvard.edu/researchers/data-tools/downloads/

If you download the full package it should have everything needed for using FIVE.

-Aaron

On Thu, Aug 13, 2020 at 2:11 PM Lorie-Marlène Brault Foisy <loriemarlen...@gmail.com> wrote:

Hi Aaron,

I've used GLM Flex fast4 to do a 3X3 repeated measures ANOVA. Everything worked well and I have some results (see image). 

I would like to download FIVE to visualize the interaction and main effects but I can't find the utility package.

Where can I download it? 

Thank you in advance,

Lorie

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[Aaron Schultz]

The problem is that the file defaultUnderlay.nii is not in the matlab path. That file should be in the "DataFiles" folder.

-Aaron

[Aaron Schultz]

You can also make a copy of any image you would like to be the default underlay, name the copy "defaultUnderlay.nii" and make sure it's in a folder that has been added to the MATLAB path.

-Aaron

[Lorie-Marlène Brault Foisy]

It works now! Thanks!!

Le jeudi 13 août 2020 14:50:52 UTC-4, Aaron Schultz a écrit :

You can also make a copy of any image you would like to be the default underlay, name the copy "defaultUnderlay.nii" and make sure it's in a folder that has been added to the MATLAB path.

-Aaron

On Thu, Aug 13, 2020 at 2:49 PM Aaron Schultz <ap.s...@gmail.com> wrote:

The problem is that the file defaultUnderlay.nii is not in the matlab path. That file should be in the "DataFiles" folder.

-Aaron

On Thu, Aug 13, 2020 at 2:14 PM Aaron Schultz <ap.s...@gmail.com> wrote:

I recently moved the old mrtools.mgh.harvard.edu to a new server.  Download links can now be found here: https://habs.mgh.harvard.edu/researchers/data-tools/downloads/

If you download the full package it should have everything needed for using FIVE.

-Aaron

On Thu, Aug 13, 2020 at 2:11 PM Lorie-Marlène Brault Foisy <loriemarlen...@gmail.com> wrote:

Hi Aaron,

I've used GLM Flex fast4 to do a 3X3 repeated measures ANOVA. Everything worked well and I have some results (see image). 

I would like to download FIVE to visualize the interaction and main effects but I can't find the utility package.

Where can I download it? 

Thank you in advance,

Lorie

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[Lorie-Marlène Brault Foisy]

Hey Aaron,

I have been able to open my results with FIVE. However, I am not able to get the peak info. I get this error code:

Undefined function or variable 'peak_nii'.

Error in FIVE/getPeakInfo (line 3243) [peak.voxels, peak.voxelstats, peak.clusterstats, peak.sigthresh, peak.regions, peak.mapparameters, peak.UID] = peak_nii(Obj(vn).FullPath(1:end-2),S);

Error while evaluating Menu Callback

I also can't filter the results by adjusting for the number of voxels (e.g. if I only want to see activations of min 20 voxels). 

Can you help me with these problems?

Thanks in advance,

Lorie