As a php developer, I think it is not productive to think that Flux really provides a good tool for php coding.
In web designs, there are essentially two skill sets, the graphic design, the layout of the site, and the functionality of the site. I have yet to see one piece of software that really offers meaningful support in both of these areas. Dreamweaver tried to do this and pretty much failed (in my opinion).
I just started using Flux recently because I wanted a more wysiwyg format for web page and template layout. I was perfectly happy with Coda, the software I use for coding, but sometimes needed something that let me do more visual layout.
I would recommend using Flux for what it is good at and using other software for what it is good at. Create some beautiful input forms in Flux and then write (or copy and paste) the php or other code to process those forms in an editor designed to support coding.
One wish I have for Flux, and it seems to be going in that direction, is to make it easier to integrate with other software like Coda. This would mean, from my perspective, 3 things:
1. Don't change directly entered code
2. Come up with some functionality that formats all code, html & css, according to coding standards
3. Make it ease to import export and modify files from both within and without Flux
Any one piece of software is unlikely to do everything right. Unfortunately, most web design software sets up sites and other file management features to force the use to work within their file management format. This is easier from a software designers standpoint, but for those of us who want to get the support of different software in our web design work, flexibility in this area is big time desirable.
I think we are moving into a kind of coding 2.0 environment where, as coders, we are working with a cluster of different software that provides us with the different functions that we need. I think the Dreamweaver "meet all needs" era is over.
Flux is a tool that does what it does; don't try to get it to do everything.
--Kenoli
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